Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDB3O75112 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDB3O75112 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LDB3O75112 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDB3O75112 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.92■□□□□ 0.94
LDB3O75112 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.92■□□□□ 0.94
LDB3O75112 AC092171.4-201ENST00000609130 632 ntBASIC20.92■□□□□ 0.94
LDB3O75112 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.92■□□□□ 0.94
LDB3O75112 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.92■□□□□ 0.94
LDB3O75112 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDB3O75112 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LDB3O75112 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.92■□□□□ 0.94
LDB3O75112 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDB3O75112 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.92■□□□□ 0.94
LDB3O75112 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDB3O75112 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.92■□□□□ 0.94
LDB3O75112 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LDB3O75112 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LDB3O75112 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LDB3O75112 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.91■□□□□ 0.94
LDB3O75112 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
LDB3O75112 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.91■□□□□ 0.94
LDB3O75112 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LDB3O75112 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.91■□□□□ 0.94
LDB3O75112 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LDB3O75112 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.91■□□□□ 0.94
LDB3O75112 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
LDB3O75112 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.91■□□□□ 0.94
LDB3O75112 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.91■□□□□ 0.94
LDB3O75112 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LDB3O75112 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.91■□□□□ 0.94
LDB3O75112 pRNA.6-201ENST00000610482 90 ntBASIC20.91■□□□□ 0.94
LDB3O75112 pRNA.5-201ENST00000612139 90 ntBASIC20.91■□□□□ 0.94
LDB3O75112 pRNA.11-201ENST00000618423 90 ntBASIC20.91■□□□□ 0.94
LDB3O75112 pRNA.13-201ENST00000619112 90 ntBASIC20.91■□□□□ 0.94
LDB3O75112 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LDB3O75112 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.9■□□□□ 0.94
LDB3O75112 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
LDB3O75112 SYT6-210ENST00000641643 1587 ntBASIC20.9■□□□□ 0.94
LDB3O75112 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
LDB3O75112 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LDB3O75112 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
LDB3O75112 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.9■□□□□ 0.94
LDB3O75112 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.9■□□□□ 0.94
LDB3O75112 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.9■□□□□ 0.94
LDB3O75112 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.9■□□□□ 0.94
LDB3O75112 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LDB3O75112 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
LDB3O75112 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
LDB3O75112 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LDB3O75112 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LDB3O75112 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.89■□□□□ 0.93
LDB3O75112 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LDB3O75112 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.89■□□□□ 0.93
LDB3O75112 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LDB3O75112 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.89■□□□□ 0.93
LDB3O75112 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LDB3O75112 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.89■□□□□ 0.93
LDB3O75112 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.89■□□□□ 0.93
LDB3O75112 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.89■□□□□ 0.93
LDB3O75112 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
LDB3O75112 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
LDB3O75112 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
LDB3O75112 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.88■□□□□ 0.93
LDB3O75112 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDB3O75112 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDB3O75112 SERBP1P1-201ENST00000396021 1160 ntBASIC20.88■□□□□ 0.93
LDB3O75112 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.88■□□□□ 0.93
LDB3O75112 DUX4L19-201ENST00000557448 1267 ntBASIC20.88■□□□□ 0.93
LDB3O75112 MIR3181-201ENST00000578512 73 ntBASIC20.88■□□□□ 0.93
LDB3O75112 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.88■□□□□ 0.93
LDB3O75112 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDB3O75112 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
LDB3O75112 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LDB3O75112 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LDB3O75112 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.87■□□□□ 0.93
LDB3O75112 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
LDB3O75112 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LDB3O75112 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
LDB3O75112 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LDB3O75112 UNC93B3-201ENST00000308076 687 ntBASIC20.87■□□□□ 0.93
LDB3O75112 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LDB3O75112 AC096631.2-201ENST00000436136 790 ntBASIC20.87■□□□□ 0.93
LDB3O75112 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LDB3O75112 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.87■□□□□ 0.93
LDB3O75112 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.87■□□□□ 0.93
LDB3O75112 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LDB3O75112 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LDB3O75112 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LDB3O75112 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.86■□□□□ 0.93
LDB3O75112 AL499627.2-201ENST00000606283 725 ntBASIC20.86■□□□□ 0.93
LDB3O75112 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LDB3O75112 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LDB3O75112 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LDB3O75112 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.86■□□□□ 0.93
LDB3O75112 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB3O75112 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
LDB3O75112 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.85■□□□□ 0.93
LDB3O75112 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB3O75112 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms