Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC14.34□□□□□ -0.11
BDNFP23560 AC104961.1-201ENST00000427605 771 ntBASIC14.34□□□□□ -0.11
BDNFP23560 AC092810.2-201ENST00000431570 362 ntBASIC14.34□□□□□ -0.11
BDNFP23560 PSMD4P1-201ENST00000433951 1109 ntBASIC14.34□□□□□ -0.11
BDNFP23560 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC14.34□□□□□ -0.11
BDNFP23560 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC14.34□□□□□ -0.11
BDNFP23560 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC14.34□□□□□ -0.11
BDNFP23560 AC055811.3-201ENST00000584952 686 ntBASIC14.34□□□□□ -0.11
BDNFP23560 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC14.34□□□□□ -0.11
BDNFP23560 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC14.34□□□□□ -0.11
BDNFP23560 AC138466.4-201ENST00000623965 852 ntBASIC14.34□□□□□ -0.11
BDNFP23560 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
BDNFP23560 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC14.34□□□□□ -0.11
BDNFP23560 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
BDNFP23560 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC14.34□□□□□ -0.11
BDNFP23560 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC14.34□□□□□ -0.11
BDNFP23560 FKBP4P8-201ENST00000610931 1369 ntBASIC14.34□□□□□ -0.11
BDNFP23560 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BDNFP23560 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
BDNFP23560 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
BDNFP23560 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
BDNFP23560 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
BDNFP23560 PEG13-201ENST00000631594 5667 ntBASIC14.33□□□□□ -0.11
BDNFP23560 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
BDNFP23560 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC14.33□□□□□ -0.11
BDNFP23560 AC007336.3-201ENST00000623886 2160 ntBASIC14.33□□□□□ -0.11
BDNFP23560 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.33□□□□□ -0.12
BDNFP23560 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 AL445250.1-201ENST00000641671 2259 ntBASIC14.33□□□□□ -0.12
BDNFP23560 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
BDNFP23560 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC14.33□□□□□ -0.12
BDNFP23560 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC14.33□□□□□ -0.12
BDNFP23560 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC14.33□□□□□ -0.12
BDNFP23560 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC14.33□□□□□ -0.12
BDNFP23560 RN7SL128P-201ENST00000467883 305 ntBASIC14.33□□□□□ -0.12
BDNFP23560 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC14.33□□□□□ -0.12
BDNFP23560 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC14.33□□□□□ -0.12
BDNFP23560 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC14.33□□□□□ -0.12
BDNFP23560 METTL7AP1-201ENST00000547343 496 ntBASIC14.33□□□□□ -0.12
BDNFP23560 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC14.33□□□□□ -0.12
BDNFP23560 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC14.33□□□□□ -0.12
BDNFP23560 FAM187B2P-201ENST00000577135 713 ntBASIC14.33□□□□□ -0.12
BDNFP23560 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 AC005274.1-201ENST00000623460 802 ntBASIC14.33□□□□□ -0.12
BDNFP23560 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
BDNFP23560 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
BDNFP23560 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC14.33□□□□□ -0.12
BDNFP23560 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.33□□□□□ -0.12
BDNFP23560 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
BDNFP23560 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC14.33□□□□□ -0.12
BDNFP23560 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
BDNFP23560 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
BDNFP23560 AC005252.3-201ENST00000623855 2258 ntBASIC14.32□□□□□ -0.12
BDNFP23560 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.32□□□□□ -0.12
BDNFP23560 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC14.32□□□□□ -0.12
BDNFP23560 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
BDNFP23560 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
BDNFP23560 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 F2-205ENST00000530231 1849 ntTSL 5 BASIC14.32□□□□□ -0.12
BDNFP23560 DDC-214ENST00000622873 1839 ntTSL 3 BASIC14.32□□□□□ -0.12
BDNFP23560 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC14.32□□□□□ -0.12
BDNFP23560 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 AC073548.1-201ENST00000624088 1882 ntBASIC14.32□□□□□ -0.12
BDNFP23560 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC14.32□□□□□ -0.12
BDNFP23560 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 SERF2-204ENST00000402131 586 ntTSL 2 BASIC14.32□□□□□ -0.12
BDNFP23560 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms