Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 GOLGA8A-201ENST00000359187 1877 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 TARS2-205ENST00000438568 2188 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 PES1-205ENST00000405677 2708 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 AC008764.8-201ENST00000623966 2717 ntBASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 PIGG-208ENST00000504346 3019 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 ABLIM2-206ENST00000447017 2902 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 MAX-212ENST00000555932 1673 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 ENG-201ENST00000344849 3059 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 FBLN1-208ENST00000442170 2531 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 AC092028.1-202ENST00000641483 3547 ntBASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 AC092028.1-201ENST00000641781 3540 ntBASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 TRMT1-202ENST00000357720 2142 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 AC026954.1-201ENST00000429771 1293 ntBASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 SLC25A15P3-201ENST00000505530 290 ntBASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 POLD4-211ENST00000539074 714 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 DNM1P51-201ENST00000558149 522 ntBASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 APBB1-223ENST00000618005 2107 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 MEIS2-215ENST00000559561 1442 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 AC138761.6-201ENST00000583997 1423 ntBASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 ZBTB26-201ENST00000373654 2047 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 SLC22A6-202ENST00000377871 2151 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 DUSP11-202ENST00000443070 2175 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 SLC28A1-203ENST00000394573 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 KRT8P43-201ENST00000406052 1458 ntBASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 CEACAM20-201ENST00000611497 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 PRAME-201ENST00000398741 2202 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 BHMT-201ENST00000274353 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 ETAA1-201ENST00000272342 3418 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 OFD1-203ENST00000380567 3736 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC28BQ9BUN5 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 CTAGE10P-201ENST00000318353 2408 ntBASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 BEST1-208ENST00000534553 1829 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 CLTCL1-210ENST00000617926 1695 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 OXR1-202ENST00000312046 4406 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 KCNH4-202ENST00000607371 3723 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 RAB27A-201ENST00000336787 3446 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 PTCD2-212ENST00000543322 2029 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 PSG8-AS1-201ENST00000425668 1873 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 FAM214B-205ENST00000488109 2999 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 ERG-211ENST00000453032 1595 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 PLAT-202ENST00000352041 2516 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 MED24-204ENST00000394128 3479 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 ZSCAN32-203ENST00000396852 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms