Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RETREG3Q86VR2 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.28■■□□□ 1
RETREG3Q86VR2 C11orf96-202ENST00000528572 1834 ntBASIC21.28■■□□□ 1
RETREG3Q86VR2 AC092053.2-201ENST00000640557 1818 ntBASIC21.28■■□□□ 1
RETREG3Q86VR2 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.28■■□□□ 1
RETREG3Q86VR2 HSD17B1P1-201ENST00000590052 955 ntBASIC21.28■■□□□ 1
RETREG3Q86VR2 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
RETREG3Q86VR2 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RETREG3Q86VR2 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.27■■□□□ 1
RETREG3Q86VR2 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
RETREG3Q86VR2 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
RETREG3Q86VR2 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RETREG3Q86VR2 RARRES2P2-201ENST00000394842 485 ntBASIC21.27■■□□□ 1
RETREG3Q86VR2 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
RETREG3Q86VR2 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RETREG3Q86VR2 AC022616.5-201ENST00000518796 181 ntBASIC21.27■■□□□ 1
RETREG3Q86VR2 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RETREG3Q86VR2 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.27■■□□□ 1
RETREG3Q86VR2 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RETREG3Q86VR2 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 AC120024.1-201ENST00000562672 995 ntBASIC21.26■□□□□ 0.99
RETREG3Q86VR2 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.26■□□□□ 0.99
RETREG3Q86VR2 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.25■□□□□ 0.99
RETREG3Q86VR2 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.25■□□□□ 0.99
RETREG3Q86VR2 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RETREG3Q86VR2 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RETREG3Q86VR2 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
RETREG3Q86VR2 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
RETREG3Q86VR2 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RETREG3Q86VR2 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RETREG3Q86VR2 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 AC087742.1-201ENST00000575880 1738 ntBASIC21.24■□□□□ 0.99
RETREG3Q86VR2 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETREG3Q86VR2 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RETREG3Q86VR2 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
RETREG3Q86VR2 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RETREG3Q86VR2 AC004448.1-201ENST00000458332 883 ntBASIC21.22■□□□□ 0.99
RETREG3Q86VR2 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
RETREG3Q86VR2 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.22■□□□□ 0.99
RETREG3Q86VR2 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RETREG3Q86VR2 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
RETREG3Q86VR2 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RETREG3Q86VR2 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RETREG3Q86VR2 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.21■□□□□ 0.99
RETREG3Q86VR2 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RETREG3Q86VR2 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.21■□□□□ 0.99
RETREG3Q86VR2 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.21■□□□□ 0.99
RETREG3Q86VR2 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RETREG3Q86VR2 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RETREG3Q86VR2 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
RETREG3Q86VR2 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.2■□□□□ 0.98
RETREG3Q86VR2 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RETREG3Q86VR2 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
RETREG3Q86VR2 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RETREG3Q86VR2 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
RETREG3Q86VR2 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms