Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 AC144652.1-201ENST00000609974 1624 ntBASIC22.28■■□□□ 1.16
LDB1Q86U70 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC22.28■■□□□ 1.16
LDB1Q86U70 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LDB1Q86U70 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LDB1Q86U70 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.28■■□□□ 1.16
LDB1Q86U70 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LDB1Q86U70 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.28■■□□□ 1.16
LDB1Q86U70 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LDB1Q86U70 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
LDB1Q86U70 MIR6724-1-201ENST00000616420 92 ntBASIC22.27■■□□□ 1.16
LDB1Q86U70 MIR6724-2-201ENST00000616483 92 ntBASIC22.27■■□□□ 1.16
LDB1Q86U70 MIR6724-4-201ENST00000617390 92 ntBASIC22.27■■□□□ 1.16
LDB1Q86U70 MIR6724-3-201ENST00000622482 92 ntBASIC22.27■■□□□ 1.16
LDB1Q86U70 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
LDB1Q86U70 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.27■■□□□ 1.16
LDB1Q86U70 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
LDB1Q86U70 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LDB1Q86U70 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC22.26■■□□□ 1.15
LDB1Q86U70 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LDB1Q86U70 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC22.26■■□□□ 1.15
LDB1Q86U70 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC22.26■■□□□ 1.15
LDB1Q86U70 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC22.26■■□□□ 1.15
LDB1Q86U70 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LDB1Q86U70 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LDB1Q86U70 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
LDB1Q86U70 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.26■■□□□ 1.15
LDB1Q86U70 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LDB1Q86U70 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
LDB1Q86U70 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
LDB1Q86U70 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC22.25■■□□□ 1.15
LDB1Q86U70 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC22.25■■□□□ 1.15
LDB1Q86U70 GRAMD4P7-201ENST00000578182 1232 ntBASIC22.25■■□□□ 1.15
LDB1Q86U70 NKILA-201ENST00000613231 537 ntTSL 4 BASIC22.25■■□□□ 1.15
LDB1Q86U70 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
LDB1Q86U70 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.25■■□□□ 1.15
LDB1Q86U70 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
LDB1Q86U70 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LDB1Q86U70 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LDB1Q86U70 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LDB1Q86U70 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC22.25■■□□□ 1.15
LDB1Q86U70 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LDB1Q86U70 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LDB1Q86U70 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LDB1Q86U70 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC22.23■■□□□ 1.15
LDB1Q86U70 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LDB1Q86U70 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LDB1Q86U70 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LDB1Q86U70 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LDB1Q86U70 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
LDB1Q86U70 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LDB1Q86U70 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LDB1Q86U70 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.23■■□□□ 1.15
LDB1Q86U70 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC22.22■■□□□ 1.15
LDB1Q86U70 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LDB1Q86U70 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
LDB1Q86U70 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LDB1Q86U70 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
LDB1Q86U70 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC22.21■■□□□ 1.15
LDB1Q86U70 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LDB1Q86U70 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.2■■□□□ 1.14
LDB1Q86U70 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC22.2■■□□□ 1.14
LDB1Q86U70 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LDB1Q86U70 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LDB1Q86U70 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.2■■□□□ 1.14
LDB1Q86U70 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LDB1Q86U70 AK3-203ENST00000447596 705 ntTSL 2 BASIC22.2■■□□□ 1.14
LDB1Q86U70 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.2■■□□□ 1.14
LDB1Q86U70 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC22.2■■□□□ 1.14
LDB1Q86U70 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
LDB1Q86U70 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
LDB1Q86U70 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
LDB1Q86U70 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LDB1Q86U70 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LDB1Q86U70 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LDB1Q86U70 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC22.19■■□□□ 1.14
LDB1Q86U70 LINC01529-204ENST00000636474 1715 ntBASIC22.19■■□□□ 1.14
LDB1Q86U70 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.19■■□□□ 1.14
LDB1Q86U70 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
LDB1Q86U70 AC233723.2-201ENST00000623798 2106 ntBASIC22.18■■□□□ 1.14
LDB1Q86U70 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LDB1Q86U70 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
LDB1Q86U70 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.18■■□□□ 1.14
LDB1Q86U70 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
LDB1Q86U70 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC22.18■■□□□ 1.14
LDB1Q86U70 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LDB1Q86U70 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LDB1Q86U70 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC22.18■■□□□ 1.14
LDB1Q86U70 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
LDB1Q86U70 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
LDB1Q86U70 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.17■■□□□ 1.14
LDB1Q86U70 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
LDB1Q86U70 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LDB1Q86U70 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
LDB1Q86U70 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LDB1Q86U70 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LDB1Q86U70 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC22.17■■□□□ 1.14
LDB1Q86U70 AL117332.1-201ENST00000622628 974 ntBASIC22.17■■□□□ 1.14
LDB1Q86U70 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC22.17■■□□□ 1.14
LDB1Q86U70 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.17■■□□□ 1.14
LDB1Q86U70 GCA-201ENST00000233612 1694 ntTSL 2 BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms