Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.1■□□□□ 0.97
RUNDC3AQ59EK9 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.09■□□□□ 0.97
RUNDC3AQ59EK9 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RUNDC3AQ59EK9 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.09■□□□□ 0.97
RUNDC3AQ59EK9 NTF6A-201ENST00000591175 560 ntBASIC21.09■□□□□ 0.97
RUNDC3AQ59EK9 BHLHE23-202ENST00000612929 1109 ntBASIC21.09■□□□□ 0.97
RUNDC3AQ59EK9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RUNDC3AQ59EK9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.09■□□□□ 0.97
RUNDC3AQ59EK9 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
RUNDC3AQ59EK9 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RUNDC3AQ59EK9 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RUNDC3AQ59EK9 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
RUNDC3AQ59EK9 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.08■□□□□ 0.97
RUNDC3AQ59EK9 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.08■□□□□ 0.97
RUNDC3AQ59EK9 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RUNDC3AQ59EK9 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
RUNDC3AQ59EK9 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RUNDC3AQ59EK9 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
RUNDC3AQ59EK9 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
RUNDC3AQ59EK9 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.08■□□□□ 0.97
RUNDC3AQ59EK9 AC074183.2-201ENST00000623112 922 ntBASIC21.08■□□□□ 0.97
RUNDC3AQ59EK9 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RUNDC3AQ59EK9 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
RUNDC3AQ59EK9 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RUNDC3AQ59EK9 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RUNDC3AQ59EK9 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
RUNDC3AQ59EK9 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RUNDC3AQ59EK9 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RUNDC3AQ59EK9 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.07■□□□□ 0.96
RUNDC3AQ59EK9 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RUNDC3AQ59EK9 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.07■□□□□ 0.96
RUNDC3AQ59EK9 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RUNDC3AQ59EK9 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
RUNDC3AQ59EK9 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
RUNDC3AQ59EK9 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RUNDC3AQ59EK9 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RUNDC3AQ59EK9 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RUNDC3AQ59EK9 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.06■□□□□ 0.96
RUNDC3AQ59EK9 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.06■□□□□ 0.96
RUNDC3AQ59EK9 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.06■□□□□ 0.96
RUNDC3AQ59EK9 ABHD17AP5-201ENST00000580133 923 ntBASIC21.06■□□□□ 0.96
RUNDC3AQ59EK9 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.06■□□□□ 0.96
RUNDC3AQ59EK9 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RUNDC3AQ59EK9 AC139530.1-201ENST00000575312 1977 ntBASIC21.06■□□□□ 0.96
RUNDC3AQ59EK9 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
RUNDC3AQ59EK9 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RUNDC3AQ59EK9 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.05■□□□□ 0.96
RUNDC3AQ59EK9 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.05■□□□□ 0.96
RUNDC3AQ59EK9 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.05■□□□□ 0.96
RUNDC3AQ59EK9 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RUNDC3AQ59EK9 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
RUNDC3AQ59EK9 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RUNDC3AQ59EK9 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RUNDC3AQ59EK9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.04■□□□□ 0.96
RUNDC3AQ59EK9 AC004987.1-201ENST00000428627 508 ntBASIC21.04■□□□□ 0.96
RUNDC3AQ59EK9 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RUNDC3AQ59EK9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.04■□□□□ 0.96
RUNDC3AQ59EK9 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RUNDC3AQ59EK9 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RUNDC3AQ59EK9 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RUNDC3AQ59EK9 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RUNDC3AQ59EK9 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RUNDC3AQ59EK9 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RUNDC3AQ59EK9 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
RUNDC3AQ59EK9 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RUNDC3AQ59EK9 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 ATP5G2P3-201ENST00000429083 425 ntBASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RUNDC3AQ59EK9 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RUNDC3AQ59EK9 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RUNDC3AQ59EK9 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RUNDC3AQ59EK9 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RUNDC3AQ59EK9 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RUNDC3AQ59EK9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.02■□□□□ 0.96
RUNDC3AQ59EK9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.02■□□□□ 0.96
RUNDC3AQ59EK9 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.02■□□□□ 0.96
RUNDC3AQ59EK9 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RUNDC3AQ59EK9 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
RUNDC3AQ59EK9 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
RUNDC3AQ59EK9 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
RUNDC3AQ59EK9 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RUNDC3AQ59EK9 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 AC092053.2-201ENST00000640557 1818 ntBASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RUNDC3AQ59EK9 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms