Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
FOXA1P55317 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
FOXA1P55317 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
FOXA1P55317 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.64■■□□□ 1.05
FOXA1P55317 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.64■■□□□ 1.05
FOXA1P55317 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.64■■□□□ 1.05
FOXA1P55317 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
FOXA1P55317 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.64■■□□□ 1.05
FOXA1P55317 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.64■■□□□ 1.05
FOXA1P55317 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
FOXA1P55317 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.63■■□□□ 1.05
FOXA1P55317 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
FOXA1P55317 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
FOXA1P55317 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.63■■□□□ 1.05
FOXA1P55317 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
FOXA1P55317 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
FOXA1P55317 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
FOXA1P55317 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.63■■□□□ 1.05
FOXA1P55317 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
FOXA1P55317 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
FOXA1P55317 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
FOXA1P55317 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
FOXA1P55317 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
FOXA1P55317 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
FOXA1P55317 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
FOXA1P55317 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
FOXA1P55317 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
FOXA1P55317 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
FOXA1P55317 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
FOXA1P55317 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
FOXA1P55317 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
FOXA1P55317 AL031848.2-201ENST00000607670 837 ntBASIC21.62■■□□□ 1.05
FOXA1P55317 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
FOXA1P55317 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
FOXA1P55317 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
FOXA1P55317 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
FOXA1P55317 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.61■■□□□ 1.05
FOXA1P55317 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.61■■□□□ 1.05
FOXA1P55317 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
FOXA1P55317 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
FOXA1P55317 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.61■■□□□ 1.05
FOXA1P55317 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.61■■□□□ 1.05
FOXA1P55317 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.61■■□□□ 1.05
FOXA1P55317 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
FOXA1P55317 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
FOXA1P55317 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
FOXA1P55317 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.61■■□□□ 1.05
FOXA1P55317 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.61■■□□□ 1.05
FOXA1P55317 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 ESRRAP2-201ENST00000418437 1549 ntBASIC21.6■■□□□ 1.05
FOXA1P55317 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.6■■□□□ 1.05
FOXA1P55317 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.6■■□□□ 1.05
FOXA1P55317 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
FOXA1P55317 AC144652.1-201ENST00000609974 1624 ntBASIC21.6■■□□□ 1.05
FOXA1P55317 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
FOXA1P55317 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.6■■□□□ 1.05
FOXA1P55317 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.6■■□□□ 1.05
FOXA1P55317 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.6■■□□□ 1.05
FOXA1P55317 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA1P55317 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
FOXA1P55317 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
FOXA1P55317 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.59■■□□□ 1.05
FOXA1P55317 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
FOXA1P55317 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.59■■□□□ 1.05
FOXA1P55317 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
FOXA1P55317 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
FOXA1P55317 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.59■■□□□ 1.05
FOXA1P55317 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
FOXA1P55317 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
FOXA1P55317 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
FOXA1P55317 AC242852.2-201ENST00000615738 1807 ntBASIC21.59■■□□□ 1.05
FOXA1P55317 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
FOXA1P55317 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.59■■□□□ 1.05
FOXA1P55317 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
FOXA1P55317 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.58■■□□□ 1.05
FOXA1P55317 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
FOXA1P55317 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
FOXA1P55317 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
FOXA1P55317 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.58■■□□□ 1.05
FOXA1P55317 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
FOXA1P55317 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.58■■□□□ 1.05
FOXA1P55317 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.58■■□□□ 1.05
FOXA1P55317 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.58■■□□□ 1.05
FOXA1P55317 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
FOXA1P55317 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
FOXA1P55317 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.58■■□□□ 1.04
FOXA1P55317 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
FOXA1P55317 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.58■■□□□ 1.04
FOXA1P55317 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms