Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CDH11P55287 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH11P55287 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH11P55287 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.35■□□□□ 0.85
CDH11P55287 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.35■□□□□ 0.85
CDH11P55287 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.35■□□□□ 0.85
CDH11P55287 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.35■□□□□ 0.85
CDH11P55287 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH11P55287 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
CDH11P55287 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CDH11P55287 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH11P55287 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.35■□□□□ 0.85
CDH11P55287 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH11P55287 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.35■□□□□ 0.85
CDH11P55287 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CDH11P55287 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH11P55287 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH11P55287 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CDH11P55287 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH11P55287 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH11P55287 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH11P55287 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH11P55287 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH11P55287 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.34■□□□□ 0.85
CDH11P55287 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH11P55287 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.34■□□□□ 0.85
CDH11P55287 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.34■□□□□ 0.85
CDH11P55287 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH11P55287 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CDH11P55287 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDH11P55287 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDH11P55287 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH11P55287 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDH11P55287 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDH11P55287 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CDH11P55287 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH11P55287 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH11P55287 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH11P55287 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.33■□□□□ 0.85
CDH11P55287 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH11P55287 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH11P55287 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH11P55287 TSPY9P-201ENST00000440215 945 ntBASIC20.33■□□□□ 0.85
CDH11P55287 TSPY11P-201ENST00000442607 1045 ntBASIC20.33■□□□□ 0.85
CDH11P55287 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.33■□□□□ 0.85
CDH11P55287 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.33■□□□□ 0.85
CDH11P55287 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDH11P55287 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.33■□□□□ 0.84
CDH11P55287 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDH11P55287 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.33■□□□□ 0.84
CDH11P55287 ECEL1P1-201ENST00000373592 1742 ntBASIC20.33■□□□□ 0.84
CDH11P55287 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDH11P55287 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.33■□□□□ 0.84
CDH11P55287 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH11P55287 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.32■□□□□ 0.84
CDH11P55287 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CDH11P55287 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH11P55287 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.32■□□□□ 0.84
CDH11P55287 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH11P55287 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CDH11P55287 ALDH1A3-203ENST00000557963 1670 ntBASIC20.32■□□□□ 0.84
CDH11P55287 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
CDH11P55287 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CDH11P55287 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 AC127496.7-201ENST00000625110 1798 ntBASIC20.31■□□□□ 0.84
CDH11P55287 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.31■□□□□ 0.84
CDH11P55287 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.31■□□□□ 0.84
CDH11P55287 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
CDH11P55287 KRT16P3-201ENST00000439127 1283 ntBASIC20.31■□□□□ 0.84
CDH11P55287 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.31■□□□□ 0.84
CDH11P55287 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.31■□□□□ 0.84
CDH11P55287 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 AC021242.3-201ENST00000607598 1377 ntBASIC20.31■□□□□ 0.84
CDH11P55287 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH11P55287 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.3■□□□□ 0.84
CDH11P55287 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH11P55287 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH11P55287 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.3■□□□□ 0.84
CDH11P55287 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH11P55287 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDH11P55287 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.3■□□□□ 0.84
CDH11P55287 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDH11P55287 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.3■□□□□ 0.84
CDH11P55287 UNC93B8-201ENST00000511903 705 ntBASIC20.3■□□□□ 0.84
CDH11P55287 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.3■□□□□ 0.84
CDH11P55287 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.3■□□□□ 0.84
CDH11P55287 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CDH11P55287 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH11P55287 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms