Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLK1P49759 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLK1P49759 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLK1P49759 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.77■□□□□ 0.92
CLK1P49759 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLK1P49759 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLK1P49759 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLK1P49759 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CLK1P49759 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CLK1P49759 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CLK1P49759 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CLK1P49759 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLK1P49759 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLK1P49759 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
CLK1P49759 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLK1P49759 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.76■□□□□ 0.91
CLK1P49759 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.76■□□□□ 0.91
CLK1P49759 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.76■□□□□ 0.91
CLK1P49759 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLK1P49759 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLK1P49759 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLK1P49759 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLK1P49759 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLK1P49759 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.76■□□□□ 0.91
CLK1P49759 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLK1P49759 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CLK1P49759 LINC00526-201ENST00000581067 1875 ntBASIC20.75■□□□□ 0.91
CLK1P49759 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLK1P49759 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.75■□□□□ 0.91
CLK1P49759 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CLK1P49759 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.75■□□□□ 0.91
CLK1P49759 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CLK1P49759 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLK1P49759 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLK1P49759 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.75■□□□□ 0.91
CLK1P49759 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLK1P49759 AC137767.1-201ENST00000602918 1920 ntBASIC20.74■□□□□ 0.91
CLK1P49759 AC021242.3-201ENST00000607598 1377 ntBASIC20.74■□□□□ 0.91
CLK1P49759 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLK1P49759 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLK1P49759 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLK1P49759 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.74■□□□□ 0.91
CLK1P49759 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
CLK1P49759 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CLK1P49759 AC127496.7-201ENST00000625110 1798 ntBASIC20.74■□□□□ 0.91
CLK1P49759 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLK1P49759 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.73■□□□□ 0.91
CLK1P49759 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.73■□□□□ 0.91
CLK1P49759 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.73■□□□□ 0.91
CLK1P49759 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLK1P49759 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLK1P49759 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CLK1P49759 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLK1P49759 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
CLK1P49759 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.73■□□□□ 0.91
CLK1P49759 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.73■□□□□ 0.91
CLK1P49759 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CLK1P49759 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLK1P49759 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.73■□□□□ 0.91
CLK1P49759 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.73■□□□□ 0.91
CLK1P49759 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLK1P49759 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLK1P49759 AC131274.2-201ENST00000580697 1507 ntBASIC20.73■□□□□ 0.91
CLK1P49759 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLK1P49759 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLK1P49759 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
CLK1P49759 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CLK1P49759 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLK1P49759 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLK1P49759 KRT125P-201ENST00000546827 989 ntBASIC20.72■□□□□ 0.91
CLK1P49759 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.72■□□□□ 0.91
CLK1P49759 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.72■□□□□ 0.91
CLK1P49759 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLK1P49759 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.72■□□□□ 0.91
CLK1P49759 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLK1P49759 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CLK1P49759 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CLK1P49759 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLK1P49759 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLK1P49759 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLK1P49759 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLK1P49759 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLK1P49759 AC004448.1-201ENST00000458332 883 ntBASIC20.71■□□□□ 0.91
CLK1P49759 AC009299.2-201ENST00000482477 511 ntBASIC20.71■□□□□ 0.91
CLK1P49759 AL451085.2-201ENST00000605085 799 ntBASIC20.71■□□□□ 0.91
CLK1P49759 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLK1P49759 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.7■□□□□ 0.91
CLK1P49759 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CLK1P49759 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.7■□□□□ 0.9
CLK1P49759 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.7■□□□□ 0.9
CLK1P49759 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLK1P49759 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLK1P49759 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CLK1P49759 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLK1P49759 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CLK1P49759 C1orf229-201ENST00000623686 2258 ntBASIC20.7■□□□□ 0.9
CLK1P49759 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLK1P49759 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLK1P49759 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.69■□□□□ 0.9
CLK1P49759 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms