Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
COL5A3P25940 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
COL5A3P25940 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC28.66■■■□□ 2.18
COL5A3P25940 GXYLT1P2-201ENST00000433312 1230 ntBASIC28.66■■■□□ 2.18
COL5A3P25940 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC28.66■■■□□ 2.18
COL5A3P25940 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
COL5A3P25940 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
COL5A3P25940 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
COL5A3P25940 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
COL5A3P25940 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC28.65■■■□□ 2.18
COL5A3P25940 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
COL5A3P25940 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC28.64■■■□□ 2.18
COL5A3P25940 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL5A3P25940 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL5A3P25940 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC28.64■■■□□ 2.18
COL5A3P25940 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC28.64■■■□□ 2.18
COL5A3P25940 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC28.64■■■□□ 2.18
COL5A3P25940 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL5A3P25940 AP005435.1-201ENST00000529293 1178 ntBASIC28.64■■■□□ 2.18
COL5A3P25940 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.18
COL5A3P25940 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL5A3P25940 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
COL5A3P25940 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL5A3P25940 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
COL5A3P25940 MPST-204ENST00000404393 1329 ntTSL 5 BASIC28.63■■■□□ 2.17
COL5A3P25940 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC28.63■■■□□ 2.17
COL5A3P25940 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
COL5A3P25940 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC28.63■■■□□ 2.17
COL5A3P25940 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL5A3P25940 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL5A3P25940 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC28.63■■■□□ 2.17
COL5A3P25940 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL5A3P25940 AC006015.1-201ENST00000429970 570 ntBASIC28.63■■■□□ 2.17
COL5A3P25940 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC28.63■■■□□ 2.17
COL5A3P25940 NTF6G-201ENST00000591094 616 ntBASIC28.63■■■□□ 2.17
COL5A3P25940 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC28.63■■■□□ 2.17
COL5A3P25940 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC28.63■■■□□ 2.17
COL5A3P25940 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC28.62■■■□□ 2.17
COL5A3P25940 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL5A3P25940 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
COL5A3P25940 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL5A3P25940 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC28.62■■■□□ 2.17
COL5A3P25940 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC28.62■■■□□ 2.17
COL5A3P25940 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC28.62■■■□□ 2.17
COL5A3P25940 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL5A3P25940 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL5A3P25940 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC28.61■■■□□ 2.17
COL5A3P25940 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL5A3P25940 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
COL5A3P25940 DUX4L4-201ENST00000566884 1269 ntBASIC28.61■■■□□ 2.17
COL5A3P25940 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL5A3P25940 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC28.61■■■□□ 2.17
COL5A3P25940 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
COL5A3P25940 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
COL5A3P25940 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL5A3P25940 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC28.6■■■□□ 2.17
COL5A3P25940 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC28.6■■■□□ 2.17
COL5A3P25940 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
COL5A3P25940 AC073111.5-205ENST00000641717 521 ntBASIC28.6■■■□□ 2.17
COL5A3P25940 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL5A3P25940 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC28.59■■■□□ 2.17
COL5A3P25940 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC28.59■■■□□ 2.17
COL5A3P25940 FP325331.1-202ENST00000623531 1380 ntBASIC28.59■■■□□ 2.17
COL5A3P25940 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL5A3P25940 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
COL5A3P25940 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC28.58■■■□□ 2.17
COL5A3P25940 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC28.58■■■□□ 2.17
COL5A3P25940 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
COL5A3P25940 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC28.58■■■□□ 2.17
COL5A3P25940 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
COL5A3P25940 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC28.57■■■□□ 2.16
COL5A3P25940 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC28.57■■■□□ 2.16
COL5A3P25940 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC28.57■■■□□ 2.16
COL5A3P25940 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC28.57■■■□□ 2.16
COL5A3P25940 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC28.57■■■□□ 2.16
COL5A3P25940 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL5A3P25940 AC144652.1-201ENST00000609974 1624 ntBASIC28.57■■■□□ 2.16
COL5A3P25940 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
COL5A3P25940 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
COL5A3P25940 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC28.57■■■□□ 2.16
COL5A3P25940 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC28.57■■■□□ 2.16
COL5A3P25940 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL5A3P25940 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC28.56■■■□□ 2.16
COL5A3P25940 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
COL5A3P25940 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL5A3P25940 EI24-213ENST00000618552 1747 ntTSL 5 BASIC28.56■■■□□ 2.16
COL5A3P25940 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
COL5A3P25940 AC016769.1-201ENST00000409132 1010 ntBASIC28.56■■■□□ 2.16
COL5A3P25940 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL5A3P25940 TK2-208ENST00000545043 1120 ntTSL 2 BASIC28.56■■■□□ 2.16
COL5A3P25940 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC28.56■■■□□ 2.16
COL5A3P25940 LINC02228-203ENST00000641970 1355 ntBASIC28.56■■■□□ 2.16
COL5A3P25940 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL5A3P25940 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC28.56■■■□□ 2.16
COL5A3P25940 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL5A3P25940 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC28.55■■■□□ 2.16
COL5A3P25940 MFF-208ENST00000409616 1247 ntTSL 5 BASIC28.55■■■□□ 2.16
COL5A3P25940 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC28.55■■■□□ 2.16
COL5A3P25940 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC28.55■■■□□ 2.16
COL5A3P25940 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms