Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC26.36■■□□□ 1.81
HMGB1P09429 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
HMGB1P09429 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
HMGB1P09429 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
HMGB1P09429 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC26.36■■□□□ 1.81
HMGB1P09429 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
HMGB1P09429 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC26.36■■□□□ 1.81
HMGB1P09429 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
HMGB1P09429 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HMGB1P09429 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HMGB1P09429 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HMGB1P09429 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC26.35■■□□□ 1.81
HMGB1P09429 AL356740.2-201ENST00000601559 647 ntBASIC26.35■■□□□ 1.81
HMGB1P09429 AL117332.1-201ENST00000622628 974 ntBASIC26.35■■□□□ 1.81
HMGB1P09429 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
HMGB1P09429 VGF-203ENST00000611537 1622 ntTSL 5 BASIC26.35■■□□□ 1.81
HMGB1P09429 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
HMGB1P09429 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
HMGB1P09429 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
HMGB1P09429 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
HMGB1P09429 MIR3621-201ENST00000580529 85 ntBASIC26.34■■□□□ 1.81
HMGB1P09429 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC26.34■■□□□ 1.81
HMGB1P09429 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC26.34■■□□□ 1.81
HMGB1P09429 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
HMGB1P09429 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
HMGB1P09429 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HMGB1P09429 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
HMGB1P09429 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
HMGB1P09429 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HMGB1P09429 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HMGB1P09429 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HMGB1P09429 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC26.33■■□□□ 1.81
HMGB1P09429 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC26.33■■□□□ 1.81
HMGB1P09429 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HMGB1P09429 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC26.33■■□□□ 1.81
HMGB1P09429 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
HMGB1P09429 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
HMGB1P09429 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC26.32■■□□□ 1.8
HMGB1P09429 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
HMGB1P09429 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
HMGB1P09429 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC26.32■■□□□ 1.8
HMGB1P09429 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
HMGB1P09429 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
HMGB1P09429 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
HMGB1P09429 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC26.31■■□□□ 1.8
HMGB1P09429 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
HMGB1P09429 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC26.31■■□□□ 1.8
HMGB1P09429 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
HMGB1P09429 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC26.31■■□□□ 1.8
HMGB1P09429 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
HMGB1P09429 AC009086.3-201ENST00000623486 1008 ntBASIC26.31■■□□□ 1.8
HMGB1P09429 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
HMGB1P09429 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC26.31■■□□□ 1.8
HMGB1P09429 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
HMGB1P09429 C1orf229-201ENST00000623686 2258 ntBASIC26.31■■□□□ 1.8
HMGB1P09429 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC26.31■■□□□ 1.8
HMGB1P09429 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
HMGB1P09429 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
HMGB1P09429 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
HMGB1P09429 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC26.3■■□□□ 1.8
HMGB1P09429 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC26.3■■□□□ 1.8
HMGB1P09429 AL356441.2-201ENST00000443009 864 ntBASIC26.3■■□□□ 1.8
HMGB1P09429 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC26.3■■□□□ 1.8
HMGB1P09429 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
HMGB1P09429 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC26.3■■□□□ 1.8
HMGB1P09429 GALC-202ENST00000393568 2054 ntTSL 2 BASIC26.3■■□□□ 1.8
HMGB1P09429 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
HMGB1P09429 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
HMGB1P09429 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
HMGB1P09429 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
HMGB1P09429 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC26.28■■□□□ 1.8
HMGB1P09429 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
HMGB1P09429 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
HMGB1P09429 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
HMGB1P09429 AC241377.3-202ENST00000626088 1088 ntBASIC26.28■■□□□ 1.8
HMGB1P09429 AC241585.3-202ENST00000628937 1088 ntBASIC26.28■■□□□ 1.8
HMGB1P09429 AC245100.8-202ENST00000629247 1058 ntBASIC26.28■■□□□ 1.8
HMGB1P09429 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC26.28■■□□□ 1.8
HMGB1P09429 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC26.27■■□□□ 1.8
HMGB1P09429 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
HMGB1P09429 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
HMGB1P09429 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
HMGB1P09429 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
HMGB1P09429 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC26.27■■□□□ 1.8
HMGB1P09429 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
HMGB1P09429 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
HMGB1P09429 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
HMGB1P09429 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC26.27■■□□□ 1.8
HMGB1P09429 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
HMGB1P09429 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HMGB1P09429 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HMGB1P09429 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
HMGB1P09429 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HMGB1P09429 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC26.26■■□□□ 1.79
HMGB1P09429 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC26.26■■□□□ 1.79
HMGB1P09429 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
HMGB1P09429 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
HMGB1P09429 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC26.26■■□□□ 1.79
HMGB1P09429 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HMGB1P09429 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms