Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26■■□□□ 1.75
CTDNEP1O95476 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CTDNEP1O95476 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CTDNEP1O95476 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC26■■□□□ 1.75
CTDNEP1O95476 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC26■■□□□ 1.75
CTDNEP1O95476 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC26■■□□□ 1.75
CTDNEP1O95476 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CTDNEP1O95476 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CTDNEP1O95476 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CTDNEP1O95476 AC233723.2-201ENST00000623798 2106 ntBASIC25.99■■□□□ 1.75
CTDNEP1O95476 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CTDNEP1O95476 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CTDNEP1O95476 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
CTDNEP1O95476 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CTDNEP1O95476 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.99■■□□□ 1.75
CTDNEP1O95476 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC25.99■■□□□ 1.75
CTDNEP1O95476 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
CTDNEP1O95476 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CTDNEP1O95476 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CTDNEP1O95476 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CTDNEP1O95476 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC25.98■■□□□ 1.75
CTDNEP1O95476 MIR6724-1-201ENST00000616420 92 ntBASIC25.98■■□□□ 1.75
CTDNEP1O95476 MIR6724-2-201ENST00000616483 92 ntBASIC25.98■■□□□ 1.75
CTDNEP1O95476 MIR6724-4-201ENST00000617390 92 ntBASIC25.98■■□□□ 1.75
CTDNEP1O95476 MIR6724-3-201ENST00000622482 92 ntBASIC25.98■■□□□ 1.75
CTDNEP1O95476 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC25.98■■□□□ 1.75
CTDNEP1O95476 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CTDNEP1O95476 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC25.98■■□□□ 1.75
CTDNEP1O95476 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CTDNEP1O95476 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CTDNEP1O95476 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
CTDNEP1O95476 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CTDNEP1O95476 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC25.97■■□□□ 1.75
CTDNEP1O95476 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.97■■□□□ 1.75
CTDNEP1O95476 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC25.96■■□□□ 1.75
CTDNEP1O95476 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC25.96■■□□□ 1.75
CTDNEP1O95476 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
CTDNEP1O95476 TRIR-205ENST00000592273 783 ntTSL 3 BASIC25.96■■□□□ 1.75
CTDNEP1O95476 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CTDNEP1O95476 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CTDNEP1O95476 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC25.96■■□□□ 1.75
CTDNEP1O95476 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.95■■□□□ 1.75
CTDNEP1O95476 C17orf82-201ENST00000623772 1530 ntBASIC25.95■■□□□ 1.74
CTDNEP1O95476 LINC01529-204ENST00000636474 1715 ntBASIC25.95■■□□□ 1.74
CTDNEP1O95476 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC25.95■■□□□ 1.74
CTDNEP1O95476 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC25.95■■□□□ 1.74
CTDNEP1O95476 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
CTDNEP1O95476 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.74
CTDNEP1O95476 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC25.95■■□□□ 1.74
CTDNEP1O95476 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.95■■□□□ 1.74
CTDNEP1O95476 FP325331.1-202ENST00000623531 1380 ntBASIC25.95■■□□□ 1.74
CTDNEP1O95476 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC25.94■■□□□ 1.74
CTDNEP1O95476 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC25.94■■□□□ 1.74
CTDNEP1O95476 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CTDNEP1O95476 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.94■■□□□ 1.74
CTDNEP1O95476 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.94■■□□□ 1.74
CTDNEP1O95476 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC25.94■■□□□ 1.74
CTDNEP1O95476 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CTDNEP1O95476 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CTDNEP1O95476 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
CTDNEP1O95476 KRT16P3-201ENST00000439127 1283 ntBASIC25.93■■□□□ 1.74
CTDNEP1O95476 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.93■■□□□ 1.74
CTDNEP1O95476 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CTDNEP1O95476 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
CTDNEP1O95476 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CTDNEP1O95476 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
CTDNEP1O95476 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CTDNEP1O95476 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CTDNEP1O95476 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CTDNEP1O95476 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CTDNEP1O95476 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
CTDNEP1O95476 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC25.92■■□□□ 1.74
CTDNEP1O95476 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.92■■□□□ 1.74
CTDNEP1O95476 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
CTDNEP1O95476 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
CTDNEP1O95476 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
CTDNEP1O95476 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
CTDNEP1O95476 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CTDNEP1O95476 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
CTDNEP1O95476 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CTDNEP1O95476 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC25.91■■□□□ 1.74
CTDNEP1O95476 DUX4L4-201ENST00000566884 1269 ntBASIC25.91■■□□□ 1.74
CTDNEP1O95476 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC25.91■■□□□ 1.74
CTDNEP1O95476 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CTDNEP1O95476 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC25.91■■□□□ 1.74
CTDNEP1O95476 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
CTDNEP1O95476 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
CTDNEP1O95476 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC25.9■■□□□ 1.74
CTDNEP1O95476 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
CTDNEP1O95476 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
CTDNEP1O95476 AL117328.2-201ENST00000624617 1940 ntBASIC25.9■■□□□ 1.74
CTDNEP1O95476 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.9■■□□□ 1.74
CTDNEP1O95476 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
CTDNEP1O95476 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
CTDNEP1O95476 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
CTDNEP1O95476 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.74
CTDNEP1O95476 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC25.89■■□□□ 1.74
CTDNEP1O95476 RASSF1-AS1-201ENST00000629828 790 ntBASIC25.89■■□□□ 1.74
CTDNEP1O95476 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
CTDNEP1O95476 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms