Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SLC28A1O00337 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SLC28A1O00337 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.47■■□□□ 1.03
SLC28A1O00337 LINC00526-201ENST00000581067 1875 ntBASIC21.47■■□□□ 1.03
SLC28A1O00337 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SLC28A1O00337 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
SLC28A1O00337 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SLC28A1O00337 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SLC28A1O00337 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.47■■□□□ 1.03
SLC28A1O00337 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SLC28A1O00337 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.47■■□□□ 1.03
SLC28A1O00337 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SLC28A1O00337 EP400NL-214ENST00000641289 2402 ntBASIC21.47■■□□□ 1.03
SLC28A1O00337 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SLC28A1O00337 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC28A1O00337 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC28A1O00337 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.46■■□□□ 1.03
SLC28A1O00337 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC28A1O00337 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC28A1O00337 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC28A1O00337 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.46■■□□□ 1.03
SLC28A1O00337 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SLC28A1O00337 AC005703.6-201ENST00000623265 1329 ntBASIC21.46■■□□□ 1.03
SLC28A1O00337 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SLC28A1O00337 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC28A1O00337 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC28A1O00337 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.03
SLC28A1O00337 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
SLC28A1O00337 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
SLC28A1O00337 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SLC28A1O00337 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SLC28A1O00337 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.45■■□□□ 1.02
SLC28A1O00337 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SLC28A1O00337 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SLC28A1O00337 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.45■■□□□ 1.02
SLC28A1O00337 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.45■■□□□ 1.02
SLC28A1O00337 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SLC28A1O00337 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
SLC28A1O00337 AC021242.3-201ENST00000607598 1377 ntBASIC21.45■■□□□ 1.02
SLC28A1O00337 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SLC28A1O00337 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.45■■□□□ 1.02
SLC28A1O00337 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.45■■□□□ 1.02
SLC28A1O00337 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.02
SLC28A1O00337 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
SLC28A1O00337 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.44■■□□□ 1.02
SLC28A1O00337 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SLC28A1O00337 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SLC28A1O00337 BX664725.1-201ENST00000438252 379 ntBASIC21.44■■□□□ 1.02
SLC28A1O00337 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.44■■□□□ 1.02
SLC28A1O00337 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SLC28A1O00337 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.44■■□□□ 1.02
SLC28A1O00337 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.44■■□□□ 1.02
SLC28A1O00337 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SLC28A1O00337 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SLC28A1O00337 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.44■■□□□ 1.02
SLC28A1O00337 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SLC28A1O00337 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SLC28A1O00337 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SLC28A1O00337 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SLC28A1O00337 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SLC28A1O00337 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SLC28A1O00337 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SLC28A1O00337 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SLC28A1O00337 AC127496.7-201ENST00000625110 1798 ntBASIC21.43■■□□□ 1.02
SLC28A1O00337 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
SLC28A1O00337 AC242852.2-201ENST00000615738 1807 ntBASIC21.43■■□□□ 1.02
SLC28A1O00337 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.42■■□□□ 1.02
SLC28A1O00337 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
SLC28A1O00337 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SLC28A1O00337 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SLC28A1O00337 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SLC28A1O00337 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.42■■□□□ 1.02
SLC28A1O00337 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SLC28A1O00337 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
SLC28A1O00337 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.42■■□□□ 1.02
SLC28A1O00337 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.42■■□□□ 1.02
SLC28A1O00337 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SLC28A1O00337 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC28A1O00337 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC28A1O00337 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC28A1O00337 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC28A1O00337 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC28A1O00337 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC28A1O00337 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.41■■□□□ 1.02
SLC28A1O00337 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SLC28A1O00337 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC28A1O00337 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC28A1O00337 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SLC28A1O00337 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SLC28A1O00337 FP325331.1-202ENST00000623531 1380 ntBASIC21.4■■□□□ 1.02
SLC28A1O00337 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
SLC28A1O00337 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.4■■□□□ 1.02
SLC28A1O00337 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
SLC28A1O00337 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SLC28A1O00337 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SLC28A1O00337 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
SLC28A1O00337 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
SLC28A1O00337 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
SLC28A1O00337 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.39■■□□□ 1.02
SLC28A1O00337 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms