Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 BCAS2P2-201ENST00000425064 674 ntBASIC12.32□□□□□ -0.44
GFRA1P56159 GCSHP3-201ENST00000431120 391 ntBASIC12.32□□□□□ -0.44
GFRA1P56159 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC12.32□□□□□ -0.44
GFRA1P56159 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC12.32□□□□□ -0.44
GFRA1P56159 GALP-202ENST00000440823 889 ntTSL 5 BASIC12.32□□□□□ -0.44
GFRA1P56159 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC12.32□□□□□ -0.44
GFRA1P56159 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC12.32□□□□□ -0.44
GFRA1P56159 AREG-202ENST00000502307 956 ntTSL 5 BASIC12.32□□□□□ -0.44
GFRA1P56159 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC12.32□□□□□ -0.44
GFRA1P56159 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC12.32□□□□□ -0.44
GFRA1P56159 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC12.32□□□□□ -0.44
GFRA1P56159 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC12.32□□□□□ -0.44
GFRA1P56159 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC12.32□□□□□ -0.44
GFRA1P56159 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC12.32□□□□□ -0.44
GFRA1P56159 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC12.32□□□□□ -0.44
GFRA1P56159 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC12.32□□□□□ -0.44
GFRA1P56159 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC12.32□□□□□ -0.44
GFRA1P56159 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC12.32□□□□□ -0.44
GFRA1P56159 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
GFRA1P56159 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC12.32□□□□□ -0.44
GFRA1P56159 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC12.32□□□□□ -0.44
GFRA1P56159 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 AC130686.1-201ENST00000622936 2466 ntBASIC12.32□□□□□ -0.44
GFRA1P56159 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
GFRA1P56159 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
GFRA1P56159 DDC-212ENST00000615193 1674 ntTSL 3 BASIC12.32□□□□□ -0.44
GFRA1P56159 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
GFRA1P56159 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC12.32□□□□□ -0.44
GFRA1P56159 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC12.31□□□□□ -0.44
GFRA1P56159 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 KRT8P42-201ENST00000405771 1399 ntBASIC12.31□□□□□ -0.44
GFRA1P56159 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
GFRA1P56159 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC12.31□□□□□ -0.44
GFRA1P56159 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 AC009474.1-201ENST00000455096 1565 ntBASIC12.31□□□□□ -0.44
GFRA1P56159 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC12.31□□□□□ -0.44
GFRA1P56159 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC12.31□□□□□ -0.44
GFRA1P56159 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
GFRA1P56159 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
GFRA1P56159 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC12.31□□□□□ -0.44
GFRA1P56159 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 U3.5-201ENST00000363448 216 ntBASIC12.31□□□□□ -0.44
GFRA1P56159 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 RPL10-203ENST00000406022 748 ntTSL 3 BASIC12.31□□□□□ -0.44
GFRA1P56159 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC12.31□□□□□ -0.44
GFRA1P56159 AC103563.1-201ENST00000429316 123 ntBASIC12.31□□□□□ -0.44
GFRA1P56159 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC12.31□□□□□ -0.44
GFRA1P56159 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC12.31□□□□□ -0.44
GFRA1P56159 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC12.31□□□□□ -0.44
GFRA1P56159 AC093909.3-201ENST00000504783 336 ntBASIC12.31□□□□□ -0.44
GFRA1P56159 SAA2-206ENST00000530400 323 ntTSL 3 BASIC12.31□□□□□ -0.44
GFRA1P56159 BAK1P2-201ENST00000532665 631 ntBASIC12.31□□□□□ -0.44
GFRA1P56159 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC12.31□□□□□ -0.44
GFRA1P56159 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC12.31□□□□□ -0.44
GFRA1P56159 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
GFRA1P56159 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC12.31□□□□□ -0.44
GFRA1P56159 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC12.31□□□□□ -0.44
GFRA1P56159 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
GFRA1P56159 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC12.31□□□□□ -0.44
GFRA1P56159 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC12.31□□□□□ -0.44
GFRA1P56159 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
GFRA1P56159 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
GFRA1P56159 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC12.31□□□□□ -0.44
GFRA1P56159 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC12.31□□□□□ -0.44
GFRA1P56159 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
GFRA1P56159 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms