Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC11.24□□□□□ -0.61
LMO4P61968 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
LMO4P61968 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC11.23□□□□□ -0.61
LMO4P61968 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
LMO4P61968 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
LMO4P61968 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
LMO4P61968 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 CR383656.2-201ENST00000548656 2254 ntBASIC11.23□□□□□ -0.61
LMO4P61968 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC11.23□□□□□ -0.61
LMO4P61968 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC11.23□□□□□ -0.61
LMO4P61968 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC11.23□□□□□ -0.61
LMO4P61968 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
LMO4P61968 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
LMO4P61968 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC11.23□□□□□ -0.61
LMO4P61968 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC11.23□□□□□ -0.61
LMO4P61968 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC11.23□□□□□ -0.61
LMO4P61968 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
LMO4P61968 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC11.23□□□□□ -0.61
LMO4P61968 SNORD23-201ENST00000408876 110 ntBASIC11.23□□□□□ -0.61
LMO4P61968 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC11.23□□□□□ -0.61
LMO4P61968 SDCBP2P1-201ENST00000416115 614 ntBASIC11.23□□□□□ -0.61
LMO4P61968 AC010086.2-201ENST00000428616 226 ntBASIC11.23□□□□□ -0.61
LMO4P61968 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC11.23□□□□□ -0.61
LMO4P61968 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC11.23□□□□□ -0.61
LMO4P61968 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC11.23□□□□□ -0.61
LMO4P61968 AL136084.1-201ENST00000449172 318 ntBASIC11.23□□□□□ -0.61
LMO4P61968 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC11.23□□□□□ -0.61
LMO4P61968 NDUFB2P1-201ENST00000506966 295 ntBASIC11.23□□□□□ -0.61
LMO4P61968 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC11.23□□□□□ -0.61
LMO4P61968 SRPK2P-201ENST00000523408 1100 ntBASIC11.23□□□□□ -0.61
LMO4P61968 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC11.23□□□□□ -0.61
LMO4P61968 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC11.23□□□□□ -0.61
LMO4P61968 JPT2-214ENST00000569765 782 ntTSL 2 BASIC11.23□□□□□ -0.61
LMO4P61968 NAA38-204ENST00000575208 529 ntTSL 3 BASIC11.23□□□□□ -0.61
LMO4P61968 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC11.23□□□□□ -0.61
LMO4P61968 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC11.23□□□□□ -0.61
LMO4P61968 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 AC020931.1-201ENST00000589622 1346 ntBASIC11.23□□□□□ -0.61
LMO4P61968 KRT8P38-201ENST00000441370 1430 ntBASIC11.23□□□□□ -0.61
LMO4P61968 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
LMO4P61968 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
LMO4P61968 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC11.23□□□□□ -0.61
LMO4P61968 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC11.23□□□□□ -0.61
LMO4P61968 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC11.23□□□□□ -0.61
LMO4P61968 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC11.23□□□□□ -0.61
LMO4P61968 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LMO4P61968 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC11.22□□□□□ -0.61
LMO4P61968 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC11.22□□□□□ -0.61
LMO4P61968 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
LMO4P61968 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC11.22□□□□□ -0.61
LMO4P61968 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 CCL19-202ENST00000378800 414 ntTSL 2 BASIC11.22□□□□□ -0.61
LMO4P61968 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
LMO4P61968 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC11.22□□□□□ -0.61
LMO4P61968 PHBP10-201ENST00000416467 784 ntBASIC11.22□□□□□ -0.61
LMO4P61968 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC11.22□□□□□ -0.61
LMO4P61968 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
LMO4P61968 IFNWP2-201ENST00000431203 580 ntBASIC11.22□□□□□ -0.61
LMO4P61968 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC11.22□□□□□ -0.61
LMO4P61968 AC133141.1-201ENST00000443015 339 ntBASIC11.22□□□□□ -0.61
LMO4P61968 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC11.22□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms