Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 MIR566-201ENST00000385187 94 ntBASIC16.23■□□□□ 0.19
HLA-DOAP06340 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 AC104961.1-201ENST00000427605 771 ntBASIC16.23■□□□□ 0.19
HLA-DOAP06340 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 RN7SL147P-201ENST00000487345 298 ntBASIC16.23■□□□□ 0.19
HLA-DOAP06340 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 AC006548.2-201ENST00000605217 529 ntBASIC16.23■□□□□ 0.19
HLA-DOAP06340 ETV2-207ENST00000619399 994 ntTSL 5 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 ST20-AS1-201ENST00000560255 4223 ntBASIC16.23■□□□□ 0.19
HLA-DOAP06340 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 AC131212.3-201ENST00000624087 4219 ntBASIC16.23■□□□□ 0.19
HLA-DOAP06340 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DOAP06340 LINC01230-201ENST00000625222 3017 ntBASIC16.22■□□□□ 0.19
HLA-DOAP06340 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 IDS-203ENST00000428056 1213 ntTSL 2 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 AC092862.1-201ENST00000541534 533 ntBASIC16.22■□□□□ 0.19
HLA-DOAP06340 RPS5-204ENST00000598098 536 ntTSL 2 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DOAP06340 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DOAP06340 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DOAP06340 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DOAP06340 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HLA-DOAP06340 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DOAP06340 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 AC103563.1-201ENST00000429316 123 ntBASIC16.21■□□□□ 0.19
HLA-DOAP06340 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 AC106047.2-201ENST00000511723 743 ntBASIC16.21■□□□□ 0.19
HLA-DOAP06340 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 RARS-210ENST00000626454 177 ntTSL 5 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
HLA-DOAP06340 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DOAP06340 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.18
HLA-DOAP06340 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.21■□□□□ 0.18
HLA-DOAP06340 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
HLA-DOAP06340 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
HLA-DOAP06340 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
HLA-DOAP06340 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
HLA-DOAP06340 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms