Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC11.9□□□□□ -0.5
SDCBPO00560 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC11.9□□□□□ -0.5
SDCBPO00560 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC11.9□□□□□ -0.5
SDCBPO00560 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC11.9□□□□□ -0.5
SDCBPO00560 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 AC099336.1-201ENST00000417053 1171 ntBASIC11.9□□□□□ -0.5
SDCBPO00560 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 AL021155.1-201ENST00000438808 2637 ntBASIC11.9□□□□□ -0.5
SDCBPO00560 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC11.9□□□□□ -0.5
SDCBPO00560 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC11.9□□□□□ -0.5
SDCBPO00560 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC11.9□□□□□ -0.5
SDCBPO00560 KRT18P15-201ENST00000458108 1291 ntBASIC11.9□□□□□ -0.5
SDCBPO00560 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC11.9□□□□□ -0.5
SDCBPO00560 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC11.9□□□□□ -0.5
SDCBPO00560 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC11.9□□□□□ -0.5
SDCBPO00560 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
SDCBPO00560 HILS1-202ENST00000545329 423 ntBASIC11.9□□□□□ -0.5
SDCBPO00560 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 AP005482.1-201ENST00000563722 1273 ntBASIC11.9□□□□□ -0.5
SDCBPO00560 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC11.9□□□□□ -0.5
SDCBPO00560 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC11.9□□□□□ -0.5
SDCBPO00560 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC11.9□□□□□ -0.5
SDCBPO00560 PAM16-211ENST00000575848 518 ntTSL 3 BASIC11.9□□□□□ -0.5
SDCBPO00560 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 AC005962.1-201ENST00000584100 773 ntBASIC11.9□□□□□ -0.5
SDCBPO00560 CYGB-203ENST00000589145 788 ntTSL 3 BASIC11.9□□□□□ -0.5
SDCBPO00560 AC010328.2-201ENST00000597698 1111 ntBASIC11.9□□□□□ -0.5
SDCBPO00560 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
SDCBPO00560 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 FAM71E2-201ENST00000424985 3191 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 MCF2L-213ENST00000421756 3560 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 AC073957.3-201ENST00000609998 6758 ntBASIC11.9□□□□□ -0.5
SDCBPO00560 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
SDCBPO00560 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC11.9□□□□□ -0.5
SDCBPO00560 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
SDCBPO00560 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
SDCBPO00560 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
SDCBPO00560 AC010547.1-201ENST00000500612 2793 ntTSL 2 BASIC11.9□□□□□ -0.51
SDCBPO00560 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 AC025183.3-201ENST00000623526 1482 ntBASIC11.89□□□□□ -0.51
SDCBPO00560 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
SDCBPO00560 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC11.89□□□□□ -0.51
SDCBPO00560 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC11.89□□□□□ -0.51
SDCBPO00560 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC11.89□□□□□ -0.51
SDCBPO00560 AC019205.2-203ENST00000421315 3362 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
SDCBPO00560 FLAD1-207ENST00000368433 2656 ntTSL 2 BASIC11.89□□□□□ -0.51
SDCBPO00560 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
SDCBPO00560 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
SDCBPO00560 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
SDCBPO00560 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC11.89□□□□□ -0.51
SDCBPO00560 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
SDCBPO00560 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC11.89□□□□□ -0.51
SDCBPO00560 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SDCBPO00560 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC11.89□□□□□ -0.51
SDCBPO00560 AL354877.1-201ENST00000424412 413 ntBASIC11.89□□□□□ -0.51
SDCBPO00560 OLR1-203ENST00000432556 950 ntTSL 2 BASIC11.89□□□□□ -0.51
SDCBPO00560 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC11.89□□□□□ -0.51
SDCBPO00560 ST13P19-201ENST00000442505 1124 ntBASIC11.89□□□□□ -0.51
SDCBPO00560 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms