Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
PCNAP12004 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
PCNAP12004 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC13.65□□□□□ -0.22
PCNAP12004 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC13.65□□□□□ -0.22
PCNAP12004 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC13.65□□□□□ -0.22
PCNAP12004 EIF4HP1-201ENST00000453115 687 ntBASIC13.65□□□□□ -0.22
PCNAP12004 MARK2P5-201ENST00000507649 634 ntBASIC13.65□□□□□ -0.22
PCNAP12004 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC13.65□□□□□ -0.22
PCNAP12004 CFL1-212ENST00000531413 636 ntTSL 3 BASIC13.65□□□□□ -0.22
PCNAP12004 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.65□□□□□ -0.22
PCNAP12004 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
PCNAP12004 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
PCNAP12004 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
PCNAP12004 AL451050.2-201ENST00000606967 682 ntBASIC13.65□□□□□ -0.22
PCNAP12004 AL022328.3-201ENST00000607943 679 ntBASIC13.65□□□□□ -0.22
PCNAP12004 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC13.65□□□□□ -0.22
PCNAP12004 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.65□□□□□ -0.22
PCNAP12004 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 AL139158.3-201ENST00000641212 1562 ntBASIC13.65□□□□□ -0.22
PCNAP12004 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
PCNAP12004 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
PCNAP12004 OR2I1P-208ENST00000641137 4948 ntBASIC13.65□□□□□ -0.22
PCNAP12004 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 LINC01815-202ENST00000641468 1409 ntBASIC13.64□□□□□ -0.23
PCNAP12004 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
PCNAP12004 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 STK26-204ENST00000481105 1835 ntTSL 2 BASIC13.64□□□□□ -0.23
PCNAP12004 TLR6-202ENST00000436693 5880 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 AC135782.3-201ENST00000562782 2105 ntBASIC13.64□□□□□ -0.23
PCNAP12004 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC13.64□□□□□ -0.23
PCNAP12004 CARS-214ENST00000529772 2637 ntTSL 2 BASIC13.64□□□□□ -0.23
PCNAP12004 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC13.64□□□□□ -0.23
PCNAP12004 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
PCNAP12004 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 STX3-207ENST00000633708 3111 ntTSL 5 BASIC13.64□□□□□ -0.23
PCNAP12004 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC13.64□□□□□ -0.23
PCNAP12004 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC13.64□□□□□ -0.23
PCNAP12004 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC13.64□□□□□ -0.23
PCNAP12004 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC13.64□□□□□ -0.23
PCNAP12004 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC13.64□□□□□ -0.23
PCNAP12004 KRT8P21-201ENST00000430398 1491 ntBASIC13.64□□□□□ -0.23
PCNAP12004 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.64□□□□□ -0.23
PCNAP12004 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.64□□□□□ -0.23
PCNAP12004 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.64□□□□□ -0.23
PCNAP12004 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.64□□□□□ -0.23
PCNAP12004 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.64□□□□□ -0.23
PCNAP12004 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC13.64□□□□□ -0.23
PCNAP12004 CCNC-217ENST00000523985 958 ntTSL 2 BASIC13.64□□□□□ -0.23
PCNAP12004 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC13.64□□□□□ -0.23
PCNAP12004 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC13.64□□□□□ -0.23
PCNAP12004 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC13.64□□□□□ -0.23
PCNAP12004 MIR3615-201ENST00000581999 87 ntBASIC13.64□□□□□ -0.23
PCNAP12004 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC13.64□□□□□ -0.23
PCNAP12004 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC13.64□□□□□ -0.23
PCNAP12004 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCNAP12004 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC13.64□□□□□ -0.23
PCNAP12004 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms