Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC103702.1-201ENST00000548801 2630 ntBASIC16.27■□□□□ 0.2
HLA-DOAP06340 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DOAP06340 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DOAP06340 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
HLA-DOAP06340 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DOAP06340 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC16.27■□□□□ 0.2
HLA-DOAP06340 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC16.27■□□□□ 0.2
HLA-DOAP06340 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DOAP06340 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DOAP06340 NALT1-202ENST00000450304 437 ntTSL 3 BASIC16.27■□□□□ 0.2
HLA-DOAP06340 AGPAT5P1-201ENST00000455855 1019 ntBASIC16.27■□□□□ 0.2
HLA-DOAP06340 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC16.27■□□□□ 0.2
HLA-DOAP06340 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC16.27■□□□□ 0.2
HLA-DOAP06340 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC16.27■□□□□ 0.2
HLA-DOAP06340 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DOAP06340 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC16.27■□□□□ 0.2
HLA-DOAP06340 HNRNPA1P5-201ENST00000558213 966 ntBASIC16.27■□□□□ 0.2
HLA-DOAP06340 AL356740.1-201ENST00000602192 1297 ntBASIC16.27■□□□□ 0.2
HLA-DOAP06340 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC16.27■□□□□ 0.2
HLA-DOAP06340 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HLA-DOAP06340 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC16.27■□□□□ 0.2
HLA-DOAP06340 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC16.27■□□□□ 0.2
HLA-DOAP06340 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC16.27■□□□□ 0.2
HLA-DOAP06340 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HLA-DOAP06340 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.27■□□□□ 0.19
HLA-DOAP06340 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
HLA-DOAP06340 GUCY2EP-203ENST00000531117 1918 ntBASIC16.27■□□□□ 0.19
HLA-DOAP06340 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HLA-DOAP06340 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HLA-DOAP06340 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HLA-DOAP06340 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC16.27■□□□□ 0.19
HLA-DOAP06340 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HLA-DOAP06340 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 AC244197.1-201ENST00000456494 951 ntBASIC16.26■□□□□ 0.19
HLA-DOAP06340 RN7SL128P-201ENST00000467883 305 ntBASIC16.26■□□□□ 0.19
HLA-DOAP06340 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 F11R-204ENST00000537746 1245 ntTSL 2 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 AC026120.2-201ENST00000617239 309 ntBASIC16.26■□□□□ 0.19
HLA-DOAP06340 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 AC099063.4-201ENST00000641099 1602 ntBASIC16.26■□□□□ 0.19
HLA-DOAP06340 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 AC005089.1-201ENST00000619486 2241 ntBASIC16.26■□□□□ 0.19
HLA-DOAP06340 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DOAP06340 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC16.26■□□□□ 0.19
HLA-DOAP06340 KRT8P24-201ENST00000560290 1559 ntBASIC16.26■□□□□ 0.19
HLA-DOAP06340 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms