Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 AL139158.3-201ENST00000641212 1562 ntBASIC15.72■□□□□ 0.11
TPM4P67936 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC15.72■□□□□ 0.11
TPM4P67936 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
TPM4P67936 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC15.72■□□□□ 0.11
TPM4P67936 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
TPM4P67936 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.72■□□□□ 0.11
TPM4P67936 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.72■□□□□ 0.11
TPM4P67936 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.72■□□□□ 0.11
TPM4P67936 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.72■□□□□ 0.11
TPM4P67936 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.72■□□□□ 0.11
TPM4P67936 DUX4L46-201ENST00000566845 751 ntBASIC15.72■□□□□ 0.11
TPM4P67936 AJ011932.1-201ENST00000621707 465 ntBASIC15.72■□□□□ 0.11
TPM4P67936 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
TPM4P67936 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 AC106818.1-201ENST00000623223 3242 ntBASIC15.72■□□□□ 0.11
TPM4P67936 CAMK2A-201ENST00000348628 5322 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 ADARB1-214ENST00000629643 4583 ntTSL 5 BASIC15.72■□□□□ 0.11
TPM4P67936 SLIT2-204ENST00000504154 6390 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 AC005695.1-201ENST00000574307 5672 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 AL357673.2-201ENST00000623663 4969 ntTSL 5 BASIC15.72■□□□□ 0.11
TPM4P67936 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC15.72■□□□□ 0.11
TPM4P67936 MYO18B-202ENST00000407587 8090 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 ARAP3-207ENST00000626478 4928 ntTSL 5 BASIC15.72■□□□□ 0.11
TPM4P67936 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 ERCC6L2-201ENST00000288985 4564 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 CAMTA2-204ENST00000414043 4589 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM4P67936 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC15.71■□□□□ 0.11
TPM4P67936 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
TPM4P67936 LRPAP1-202ENST00000500728 7819 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 MIER2-201ENST00000264819 6884 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
TPM4P67936 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 PLEKHM1P1-202ENST00000578036 4318 ntTSL 2 BASIC15.71■□□□□ 0.11
TPM4P67936 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 STK26-204ENST00000481105 1835 ntTSL 2 BASIC15.71■□□□□ 0.11
TPM4P67936 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 PPP4R3B-206ENST00000616407 4385 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC15.71■□□□□ 0.11
TPM4P67936 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 PIN1P1-201ENST00000412108 996 ntBASIC15.71■□□□□ 0.11
TPM4P67936 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.71■□□□□ 0.11
TPM4P67936 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.71■□□□□ 0.11
TPM4P67936 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 GOLGA2P8-201ENST00000505201 779 ntBASIC15.71■□□□□ 0.11
TPM4P67936 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.71■□□□□ 0.11
TPM4P67936 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.71■□□□□ 0.11
TPM4P67936 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.71■□□□□ 0.11
TPM4P67936 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.71■□□□□ 0.11
TPM4P67936 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.71■□□□□ 0.11
TPM4P67936 PPY2P-201ENST00000582808 702 ntBASIC15.71■□□□□ 0.11
TPM4P67936 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.71■□□□□ 0.11
TPM4P67936 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.71■□□□□ 0.11
TPM4P67936 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.71■□□□□ 0.11
TPM4P67936 AC023511.2-201ENST00000618803 211 ntBASIC15.71■□□□□ 0.11
TPM4P67936 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC15.71■□□□□ 0.11
TPM4P67936 OPRK1-201ENST00000265572 5014 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 ZNF318-201ENST00000361428 8006 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TPM4P67936 TBL1X-203ENST00000407597 5596 ntTSL 2 BASIC15.71■□□□□ 0.11
TPM4P67936 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
TPM4P67936 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TPM4P67936 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
TPM4P67936 ENOX2-204ENST00000394363 4174 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
TPM4P67936 USP33-203ENST00000370793 4502 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
TPM4P67936 PI4KAP2-201ENST00000360806 2080 ntBASIC15.71■□□□□ 0.1
TPM4P67936 PCDHB19P-202ENST00000625133 2914 ntBASIC15.71■□□□□ 0.1
TPM4P67936 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC15.71■□□□□ 0.1
TPM4P67936 HCFC1-202ENST00000369984 8375 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
TPM4P67936 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms