Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RPL13AP5-201ENST00000439189 612 ntBASIC22.41■■□□□ 1.18
CUX1P39880 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC22.41■■□□□ 1.18
CUX1P39880 AC131009.2-201ENST00000542763 770 ntTSL 3 BASIC22.41■■□□□ 1.18
CUX1P39880 JPT2-214ENST00000569765 782 ntTSL 2 BASIC22.41■■□□□ 1.18
CUX1P39880 PPY-202ENST00000587006 431 ntTSL 3 BASIC22.41■■□□□ 1.18
CUX1P39880 AC100788.1-201ENST00000591108 945 ntTSL 5 BASIC22.41■■□□□ 1.18
CUX1P39880 AC006273.1-201ENST00000606966 861 ntBASIC22.41■■□□□ 1.18
CUX1P39880 AC009779.7-201ENST00000609031 469 ntBASIC22.41■■□□□ 1.18
CUX1P39880 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CUX1P39880 FARS2-201ENST00000274680 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CUX1P39880 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CUX1P39880 OR2A25-203ENST00000641663 1741 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
CUX1P39880 MIR100HG-219ENST00000533109 1794 ntTSL 5 BASIC22.41■■□□□ 1.18
CUX1P39880 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CUX1P39880 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
CUX1P39880 POM121L4P-202ENST00000427789 1891 ntBASIC22.41■■□□□ 1.18
CUX1P39880 AC020914.1-201ENST00000396477 1476 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
CUX1P39880 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC22.41■■□□□ 1.18
CUX1P39880 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC22.41■■□□□ 1.18
CUX1P39880 AC106881.1-201ENST00000605849 3329 ntBASIC22.41■■□□□ 1.18
CUX1P39880 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
CUX1P39880 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CUX1P39880 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC22.41■■□□□ 1.18
CUX1P39880 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC22.41■■□□□ 1.18
CUX1P39880 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC22.41■■□□□ 1.18
CUX1P39880 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC22.41■■□□□ 1.18
CUX1P39880 RMND5B-212ENST00000542098 1681 ntTSL 5 BASIC22.41■■□□□ 1.18
CUX1P39880 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CUX1P39880 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CUX1P39880 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CUX1P39880 ZNF493-208ENST00000599461 1769 ntBASIC22.41■■□□□ 1.18
CUX1P39880 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC22.41■■□□□ 1.18
CUX1P39880 MIR324-201ENST00000362183 83 ntBASIC22.41■■□□□ 1.18
CUX1P39880 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC22.41■■□□□ 1.18
CUX1P39880 AC074019.1-201ENST00000428788 1096 ntBASIC22.41■■□□□ 1.18
CUX1P39880 AC005011.1-201ENST00000455206 210 ntBASIC22.41■■□□□ 1.18
CUX1P39880 MYL6-210ENST00000548400 573 ntTSL 3 BASIC22.41■■□□□ 1.18
CUX1P39880 AC018868.2-201ENST00000559655 1259 ntBASIC22.41■■□□□ 1.18
CUX1P39880 AC120498.5-201ENST00000561757 299 ntBASIC22.41■■□□□ 1.18
CUX1P39880 ALOX12P1-201ENST00000579299 1229 ntBASIC22.41■■□□□ 1.18
CUX1P39880 MIR4763-201ENST00000581461 92 ntBASIC22.41■■□□□ 1.18
CUX1P39880 CYP4F10P-201ENST00000589560 752 ntBASIC22.41■■□□□ 1.18
CUX1P39880 AL109983.1-201ENST00000603234 646 ntBASIC22.41■■□□□ 1.18
CUX1P39880 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC22.41■■□□□ 1.18
CUX1P39880 Metazoa_SRP.68-201ENST00000612673 282 ntBASIC22.41■■□□□ 1.18
CUX1P39880 LINC00959-202ENST00000637128 826 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
CUX1P39880 LINC00643-207ENST00000637212 734 ntBASIC22.41■■□□□ 1.18
CUX1P39880 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CUX1P39880 VOPP1-204ENST00000418904 1317 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CUX1P39880 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC22.4■■□□□ 1.18
CUX1P39880 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC22.4■■□□□ 1.18
CUX1P39880 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 ST3GAL3-202ENST00000330208 1479 ntTSL 5 BASIC22.4■■□□□ 1.18
CUX1P39880 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
CUX1P39880 AGAP10P-201ENST00000454844 2418 ntBASIC22.4■■□□□ 1.18
CUX1P39880 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
CUX1P39880 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
CUX1P39880 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 ANAPC15-201ENST00000227618 886 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 CIDEC-204ENST00000430427 877 ntTSL 3 BASIC22.4■■□□□ 1.18
CUX1P39880 HNRNPA1P73-201ENST00000446472 928 ntBASIC22.4■■□□□ 1.18
CUX1P39880 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 LUCAT1-201ENST00000511918 828 ntTSL 3 BASIC22.4■■□□□ 1.18
CUX1P39880 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC22.4■■□□□ 1.18
CUX1P39880 IFI27L1-203ENST00000553664 647 ntTSL 5 BASIC22.4■■□□□ 1.18
CUX1P39880 AC116914.2-201ENST00000571741 291 ntTSL 5 BASIC22.4■■□□□ 1.18
CUX1P39880 INCA1-202ENST00000574617 1260 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 MAP3K14-205ENST00000617331 1049 ntTSL 5 BASIC22.4■■□□□ 1.18
CUX1P39880 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC22.4■■□□□ 1.18
CUX1P39880 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
CUX1P39880 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
CUX1P39880 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 THPO-203ENST00000445696 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUX1P39880 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC22.4■■□□□ 1.18
CUX1P39880 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CUX1P39880 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC22.39■■□□□ 1.18
CUX1P39880 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CUX1P39880 SERPINI1-202ENST00000446050 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CUX1P39880 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC22.39■■□□□ 1.18
CUX1P39880 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CUX1P39880 CR383656.2-201ENST00000548656 2254 ntBASIC22.39■■□□□ 1.18
CUX1P39880 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC22.39■■□□□ 1.18
CUX1P39880 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
CUX1P39880 INTS4P1-203ENST00000641008 3683 ntBASIC22.39■■□□□ 1.17
CUX1P39880 PRDX1-202ENST00000319248 1021 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CUX1P39880 KHDC1L-201ENST00000370388 635 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CUX1P39880 CD74-203ENST00000377795 1138 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CUX1P39880 LINC01678-202ENST00000424921 475 ntTSL 3 BASIC22.39■■□□□ 1.17
CUX1P39880 DHRSX-IT1-201ENST00000437244 651 ntTSL 5 BASIC22.39■■□□□ 1.17
CUX1P39880 AC116347.1-201ENST00000442824 720 ntBASIC22.39■■□□□ 1.17
CUX1P39880 AL669831.4-201ENST00000447500 872 ntTSL 5 BASIC22.39■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms