Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGB1P09429 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB1P09429 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB1P09429 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 PLSCR4-203ENST00000433593 2839 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB1P09429 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 PES1P2-201ENST00000449745 1735 ntBASIC16.45■□□□□ 0.22
HMGB1P09429 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB1P09429 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
HMGB1P09429 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGB1P09429 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HMGB1P09429 EML1-203ENST00000334192 4064 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGB1P09429 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGB1P09429 AC114271.1-201ENST00000612689 2813 ntBASIC16.44■□□□□ 0.22
HMGB1P09429 AC040160.2-201ENST00000623816 1675 ntBASIC16.44■□□□□ 0.22
HMGB1P09429 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGB1P09429 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.44■□□□□ 0.22
HMGB1P09429 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.44■□□□□ 0.22
HMGB1P09429 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGB1P09429 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
HMGB1P09429 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
HMGB1P09429 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC16.44■□□□□ 0.22
HMGB1P09429 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
HMGB1P09429 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC16.44■□□□□ 0.22
HMGB1P09429 MIR4326-201ENST00000582203 59 ntBASIC16.44■□□□□ 0.22
HMGB1P09429 AC103810.3-201ENST00000583567 96 ntBASIC16.44■□□□□ 0.22
HMGB1P09429 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGB1P09429 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
HMGB1P09429 AL353770.1-201ENST00000614915 403 ntBASIC16.44■□□□□ 0.22
HMGB1P09429 AC009560.1-201ENST00000620208 434 ntBASIC16.44■□□□□ 0.22
HMGB1P09429 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
HMGB1P09429 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGB1P09429 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGB1P09429 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HMGB1P09429 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB1P09429 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGB1P09429 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGB1P09429 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 RCC2P5-201ENST00000492126 1487 ntBASIC16.43■□□□□ 0.22
HMGB1P09429 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGB1P09429 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.22
HMGB1P09429 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGB1P09429 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGB1P09429 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGB1P09429 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGB1P09429 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC16.43■□□□□ 0.22
HMGB1P09429 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC16.43■□□□□ 0.22
HMGB1P09429 AP000358.1-201ENST00000456260 156 ntBASIC16.43■□□□□ 0.22
HMGB1P09429 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGB1P09429 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC16.43■□□□□ 0.22
HMGB1P09429 MIR4265-201ENST00000582152 99 ntBASIC16.43■□□□□ 0.22
HMGB1P09429 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC16.43■□□□□ 0.22
HMGB1P09429 SIGLEC22P-201ENST00000599104 714 ntBASIC16.43■□□□□ 0.22
HMGB1P09429 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC16.43■□□□□ 0.22
HMGB1P09429 AC007326.1-201ENST00000604539 458 ntBASIC16.43■□□□□ 0.22
HMGB1P09429 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC16.43■□□□□ 0.22
HMGB1P09429 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms