Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 AC133561.1-201ENST00000568600 2415 ntBASIC27.32■■□□□ 1.96
RPAP1Q9BWH6 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
RPAP1Q9BWH6 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
RPAP1Q9BWH6 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
RPAP1Q9BWH6 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
RPAP1Q9BWH6 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RPAP1Q9BWH6 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RPAP1Q9BWH6 HYI-206ENST00000372434 1025 ntTSL 5 BASIC27.31■■□□□ 1.96
RPAP1Q9BWH6 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC27.31■■□□□ 1.96
RPAP1Q9BWH6 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC27.31■■□□□ 1.96
RPAP1Q9BWH6 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RPAP1Q9BWH6 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
RPAP1Q9BWH6 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC27.3■■□□□ 1.96
RPAP1Q9BWH6 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
RPAP1Q9BWH6 SERBP1P1-201ENST00000396021 1160 ntBASIC27.3■■□□□ 1.96
RPAP1Q9BWH6 AL138724.1-201ENST00000606771 1088 ntBASIC27.3■■□□□ 1.96
RPAP1Q9BWH6 AC011298.3-201ENST00000615796 283 ntBASIC27.3■■□□□ 1.96
RPAP1Q9BWH6 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
RPAP1Q9BWH6 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
RPAP1Q9BWH6 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC27.3■■□□□ 1.96
RPAP1Q9BWH6 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RPAP1Q9BWH6 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
RPAP1Q9BWH6 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
RPAP1Q9BWH6 MIR5787-201ENST00000611784 55 ntBASIC27.29■■□□□ 1.96
RPAP1Q9BWH6 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
RPAP1Q9BWH6 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC27.28■■□□□ 1.96
RPAP1Q9BWH6 ALDH1A3-203ENST00000557963 1670 ntBASIC27.28■■□□□ 1.96
RPAP1Q9BWH6 PTCHD3P2-201ENST00000424937 1205 ntBASIC27.28■■□□□ 1.96
RPAP1Q9BWH6 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC27.28■■□□□ 1.96
RPAP1Q9BWH6 EI24-213ENST00000618552 1747 ntTSL 5 BASIC27.28■■□□□ 1.96
RPAP1Q9BWH6 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC27.28■■□□□ 1.96
RPAP1Q9BWH6 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RPAP1Q9BWH6 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RPAP1Q9BWH6 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
RPAP1Q9BWH6 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP1Q9BWH6 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC27.26■■□□□ 1.96
RPAP1Q9BWH6 AC027682.1-201ENST00000562846 899 ntBASIC27.26■■□□□ 1.95
RPAP1Q9BWH6 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC27.26■■□□□ 1.95
RPAP1Q9BWH6 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
RPAP1Q9BWH6 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
RPAP1Q9BWH6 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
RPAP1Q9BWH6 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RPAP1Q9BWH6 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
RPAP1Q9BWH6 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
RPAP1Q9BWH6 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RPAP1Q9BWH6 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
RPAP1Q9BWH6 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RPAP1Q9BWH6 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RPAP1Q9BWH6 AC009102.2-201ENST00000606772 1639 ntBASIC27.25■■□□□ 1.95
RPAP1Q9BWH6 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
RPAP1Q9BWH6 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC27.24■■□□□ 1.95
RPAP1Q9BWH6 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
RPAP1Q9BWH6 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RPAP1Q9BWH6 AC068473.5-201ENST00000616428 2072 ntBASIC27.24■■□□□ 1.95
RPAP1Q9BWH6 C17orf82-201ENST00000623772 1530 ntBASIC27.23■■□□□ 1.95
RPAP1Q9BWH6 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC27.23■■□□□ 1.95
RPAP1Q9BWH6 AC099791.2-201ENST00000605725 427 ntBASIC27.23■■□□□ 1.95
RPAP1Q9BWH6 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC27.23■■□□□ 1.95
RPAP1Q9BWH6 EI24-204ENST00000527235 1625 ntTSL 5 BASIC27.23■■□□□ 1.95
RPAP1Q9BWH6 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
RPAP1Q9BWH6 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC27.23■■□□□ 1.95
RPAP1Q9BWH6 RASA4CP-201ENST00000424092 1398 ntBASIC27.23■■□□□ 1.95
RPAP1Q9BWH6 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC27.23■■□□□ 1.95
RPAP1Q9BWH6 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RPAP1Q9BWH6 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC27.23■■□□□ 1.95
RPAP1Q9BWH6 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC27.22■■□□□ 1.95
RPAP1Q9BWH6 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
RPAP1Q9BWH6 AC104564.3-201ENST00000582367 638 ntBASIC27.22■■□□□ 1.95
RPAP1Q9BWH6 CA15P2-201ENST00000611168 834 ntBASIC27.22■■□□□ 1.95
RPAP1Q9BWH6 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
RPAP1Q9BWH6 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
RPAP1Q9BWH6 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
RPAP1Q9BWH6 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC27.22■■□□□ 1.95
RPAP1Q9BWH6 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RPAP1Q9BWH6 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC27.21■■□□□ 1.95
RPAP1Q9BWH6 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
RPAP1Q9BWH6 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RPAP1Q9BWH6 RBM38-205ENST00000440234 686 ntTSL 2 BASIC27.21■■□□□ 1.95
RPAP1Q9BWH6 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
RPAP1Q9BWH6 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC27.21■■□□□ 1.95
RPAP1Q9BWH6 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.95
RPAP1Q9BWH6 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
RPAP1Q9BWH6 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC27.2■■□□□ 1.95
RPAP1Q9BWH6 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
RPAP1Q9BWH6 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
RPAP1Q9BWH6 MAG-206ENST00000597035 542 ntTSL 4 BASIC27.2■■□□□ 1.94
RPAP1Q9BWH6 MIR6821-201ENST00000617625 74 ntBASIC27.2■■□□□ 1.94
RPAP1Q9BWH6 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms