Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC60Q8IWA6 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.05■■□□□ 1.6
CCDC60Q8IWA6 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC25.05■■□□□ 1.6
CCDC60Q8IWA6 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC25.05■■□□□ 1.6
CCDC60Q8IWA6 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
CCDC60Q8IWA6 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC60Q8IWA6 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC60Q8IWA6 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC25.04■■□□□ 1.6
CCDC60Q8IWA6 AC105265.2-201ENST00000467189 838 ntBASIC25.04■■□□□ 1.6
CCDC60Q8IWA6 AC008764.7-201ENST00000593779 1081 ntBASIC25.04■■□□□ 1.6
CCDC60Q8IWA6 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC60Q8IWA6 FP325331.1-202ENST00000623531 1380 ntBASIC25.04■■□□□ 1.6
CCDC60Q8IWA6 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC60Q8IWA6 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC60Q8IWA6 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
CCDC60Q8IWA6 AC027682.1-201ENST00000562846 899 ntBASIC25.03■■□□□ 1.6
CCDC60Q8IWA6 DUX4L4-201ENST00000566884 1269 ntBASIC25.03■■□□□ 1.6
CCDC60Q8IWA6 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC60Q8IWA6 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
CCDC60Q8IWA6 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC60Q8IWA6 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC60Q8IWA6 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC60Q8IWA6 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC60Q8IWA6 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC60Q8IWA6 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
CCDC60Q8IWA6 CA15P2-201ENST00000611168 834 ntBASIC25.02■■□□□ 1.6
CCDC60Q8IWA6 RASA4CP-201ENST00000424092 1398 ntBASIC25.02■■□□□ 1.6
CCDC60Q8IWA6 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC60Q8IWA6 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC60Q8IWA6 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 SNX3-202ENST00000349379 890 ntTSL 2 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 AC099791.1-201ENST00000416440 715 ntBASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 AL499627.2-201ENST00000606283 725 ntBASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC25.01■■□□□ 1.59
CCDC60Q8IWA6 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC60Q8IWA6 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC25■■□□□ 1.59
CCDC60Q8IWA6 AC079630.1-202ENST00000618127 1840 ntBASIC25■■□□□ 1.59
CCDC60Q8IWA6 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC60Q8IWA6 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC60Q8IWA6 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC60Q8IWA6 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC60Q8IWA6 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC60Q8IWA6 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC25■■□□□ 1.59
CCDC60Q8IWA6 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC60Q8IWA6 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC60Q8IWA6 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC60Q8IWA6 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC60Q8IWA6 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC60Q8IWA6 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC25■■□□□ 1.59
CCDC60Q8IWA6 LINC01529-204ENST00000636474 1715 ntBASIC25■■□□□ 1.59
CCDC60Q8IWA6 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC25■■□□□ 1.59
CCDC60Q8IWA6 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC25■■□□□ 1.59
CCDC60Q8IWA6 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC60Q8IWA6 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC60Q8IWA6 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC60Q8IWA6 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC24.99■■□□□ 1.59
CCDC60Q8IWA6 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC60Q8IWA6 BX842568.3-201ENST00000418104 571 ntBASIC24.99■■□□□ 1.59
CCDC60Q8IWA6 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC60Q8IWA6 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC24.99■■□□□ 1.59
CCDC60Q8IWA6 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC24.99■■□□□ 1.59
CCDC60Q8IWA6 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC60Q8IWA6 AC133637.1-201ENST00000624115 1537 ntBASIC24.99■■□□□ 1.59
CCDC60Q8IWA6 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC24.99■■□□□ 1.59
CCDC60Q8IWA6 H19-210ENST00000439725 1929 ntTSL 2 BASIC24.98■■□□□ 1.59
CCDC60Q8IWA6 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC60Q8IWA6 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC24.98■■□□□ 1.59
CCDC60Q8IWA6 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC24.98■■□□□ 1.59
CCDC60Q8IWA6 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC60Q8IWA6 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
CCDC60Q8IWA6 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC24.98■■□□□ 1.59
CCDC60Q8IWA6 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 AC233992.3-201ENST00000607491 485 ntBASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC60Q8IWA6 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms