Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
USP54Q70EL1 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC30.35■■■□□ 2.45
USP54Q70EL1 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
USP54Q70EL1 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC30.35■■■□□ 2.45
USP54Q70EL1 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC30.35■■■□□ 2.45
USP54Q70EL1 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC30.35■■■□□ 2.45
USP54Q70EL1 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC30.35■■■□□ 2.45
USP54Q70EL1 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
USP54Q70EL1 TERF1P2-201ENST00000583350 1212 ntBASIC30.35■■■□□ 2.45
USP54Q70EL1 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC30.35■■■□□ 2.45
USP54Q70EL1 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
USP54Q70EL1 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
USP54Q70EL1 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
USP54Q70EL1 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC30.35■■■□□ 2.45
USP54Q70EL1 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC30.34■■■□□ 2.45
USP54Q70EL1 FP325331.1-202ENST00000623531 1380 ntBASIC30.34■■■□□ 2.45
USP54Q70EL1 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC30.34■■■□□ 2.45
USP54Q70EL1 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC30.34■■■□□ 2.45
USP54Q70EL1 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC30.34■■■□□ 2.45
USP54Q70EL1 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC30.34■■■□□ 2.45
USP54Q70EL1 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC30.34■■■□□ 2.45
USP54Q70EL1 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
USP54Q70EL1 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC30.34■■■□□ 2.45
USP54Q70EL1 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC30.34■■■□□ 2.45
USP54Q70EL1 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
USP54Q70EL1 AC144652.1-201ENST00000609974 1624 ntBASIC30.34■■■□□ 2.45
USP54Q70EL1 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC30.34■■■□□ 2.45
USP54Q70EL1 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
USP54Q70EL1 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC30.33■■■□□ 2.45
USP54Q70EL1 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
USP54Q70EL1 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC30.33■■■□□ 2.45
USP54Q70EL1 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC30.33■■■□□ 2.45
USP54Q70EL1 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
USP54Q70EL1 EED-207ENST00000528180 1745 ntTSL 5 BASIC30.33■■■□□ 2.45
USP54Q70EL1 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
USP54Q70EL1 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
USP54Q70EL1 AC142381.3-201ENST00000568208 1670 ntBASIC30.33■■■□□ 2.45
USP54Q70EL1 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
USP54Q70EL1 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
USP54Q70EL1 ME3-201ENST00000323418 1068 ntTSL 5 BASIC30.33■■■□□ 2.45
USP54Q70EL1 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC30.33■■■□□ 2.45
USP54Q70EL1 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC30.33■■■□□ 2.45
USP54Q70EL1 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
USP54Q70EL1 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
USP54Q70EL1 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
USP54Q70EL1 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC30.32■■■□□ 2.44
USP54Q70EL1 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
USP54Q70EL1 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC30.32■■■□□ 2.44
USP54Q70EL1 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC30.32■■■□□ 2.44
USP54Q70EL1 MIR6084-201ENST00000622012 110 ntBASIC30.32■■■□□ 2.44
USP54Q70EL1 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC30.32■■■□□ 2.44
USP54Q70EL1 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC30.31■■■□□ 2.44
USP54Q70EL1 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP54Q70EL1 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP54Q70EL1 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
USP54Q70EL1 CCDC92B-201ENST00000575506 885 ntBASIC30.31■■■□□ 2.44
USP54Q70EL1 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC30.31■■■□□ 2.44
USP54Q70EL1 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP54Q70EL1 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP54Q70EL1 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
USP54Q70EL1 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP54Q70EL1 AC138932.3-201ENST00000567634 1902 ntBASIC30.31■■■□□ 2.44
USP54Q70EL1 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
USP54Q70EL1 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
USP54Q70EL1 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
USP54Q70EL1 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
USP54Q70EL1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC30.3■■■□□ 2.44
USP54Q70EL1 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC30.3■■■□□ 2.44
USP54Q70EL1 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC30.3■■■□□ 2.44
USP54Q70EL1 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC30.3■■■□□ 2.44
USP54Q70EL1 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC30.3■■■□□ 2.44
USP54Q70EL1 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC30.3■■■□□ 2.44
USP54Q70EL1 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
USP54Q70EL1 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
USP54Q70EL1 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC30.3■■■□□ 2.44
USP54Q70EL1 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
USP54Q70EL1 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
USP54Q70EL1 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
USP54Q70EL1 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
USP54Q70EL1 MED17-227ENST00000640521 2047 ntTSL 5 BASIC30.29■■■□□ 2.44
USP54Q70EL1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC30.29■■■□□ 2.44
USP54Q70EL1 KRT18P14-201ENST00000534205 1250 ntBASIC30.29■■■□□ 2.44
USP54Q70EL1 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC30.29■■■□□ 2.44
USP54Q70EL1 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC30.29■■■□□ 2.44
USP54Q70EL1 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC30.29■■■□□ 2.44
USP54Q70EL1 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
USP54Q70EL1 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
USP54Q70EL1 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
USP54Q70EL1 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC30.29■■■□□ 2.44
USP54Q70EL1 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC30.29■■■□□ 2.44
USP54Q70EL1 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
USP54Q70EL1 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
USP54Q70EL1 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
USP54Q70EL1 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC30.28■■■□□ 2.44
USP54Q70EL1 CREM-210ENST00000374721 2020 ntTSL 5 BASIC30.28■■■□□ 2.44
USP54Q70EL1 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
USP54Q70EL1 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC30.27■■■□□ 2.44
USP54Q70EL1 AC090192.1-201ENST00000517740 490 ntBASIC30.27■■■□□ 2.44
USP54Q70EL1 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC30.27■■■□□ 2.44
USP54Q70EL1 NME4-202ENST00000382940 766 ntTSL 3 BASIC30.27■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms