Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
NKX3-2P78367 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
NKX3-2P78367 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
NKX3-2P78367 AC010525.1-201ENST00000585559 441 ntBASIC25.07■■□□□ 1.6
NKX3-2P78367 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC25.07■■□□□ 1.6
NKX3-2P78367 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC25.07■■□□□ 1.6
NKX3-2P78367 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC25.07■■□□□ 1.6
NKX3-2P78367 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
NKX3-2P78367 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
NKX3-2P78367 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
NKX3-2P78367 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
NKX3-2P78367 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
NKX3-2P78367 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
NKX3-2P78367 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
NKX3-2P78367 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.06■■□□□ 1.6
NKX3-2P78367 LINC02228-203ENST00000641970 1355 ntBASIC25.05■■□□□ 1.6
NKX3-2P78367 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX3-2P78367 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX3-2P78367 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX3-2P78367 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC25.05■■□□□ 1.6
NKX3-2P78367 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX3-2P78367 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX3-2P78367 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
NKX3-2P78367 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
NKX3-2P78367 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
NKX3-2P78367 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX3-2P78367 LHPP-203ENST00000392757 840 ntTSL 3 BASIC25.04■■□□□ 1.6
NKX3-2P78367 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
NKX3-2P78367 DLX3-202ENST00000512495 834 ntTSL 2 BASIC25.04■■□□□ 1.6
NKX3-2P78367 KRT18P14-201ENST00000534205 1250 ntBASIC25.04■■□□□ 1.6
NKX3-2P78367 NTF6G-201ENST00000591094 616 ntBASIC25.04■■□□□ 1.6
NKX3-2P78367 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX3-2P78367 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX3-2P78367 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC25.03■■□□□ 1.6
NKX3-2P78367 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NKX3-2P78367 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC25.03■■□□□ 1.6
NKX3-2P78367 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC25.03■■□□□ 1.6
NKX3-2P78367 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
NKX3-2P78367 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC25.03■■□□□ 1.6
NKX3-2P78367 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC25.03■■□□□ 1.6
NKX3-2P78367 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
NKX3-2P78367 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC25.03■■□□□ 1.6
NKX3-2P78367 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
NKX3-2P78367 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX3-2P78367 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX3-2P78367 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX3-2P78367 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
NKX3-2P78367 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX3-2P78367 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
NKX3-2P78367 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX3-2P78367 AP003733.4-201ENST00000623785 1697 ntBASIC25.02■■□□□ 1.6
NKX3-2P78367 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX3-2P78367 ME3-201ENST00000323418 1068 ntTSL 5 BASIC25.02■■□□□ 1.6
NKX3-2P78367 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC25.02■■□□□ 1.6
NKX3-2P78367 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC25.02■■□□□ 1.6
NKX3-2P78367 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC25.02■■□□□ 1.6
NKX3-2P78367 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX3-2P78367 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
NKX3-2P78367 AC004911.1-201ENST00000416316 871 ntBASIC25.01■■□□□ 1.59
NKX3-2P78367 VPS53-216ENST00000574029 585 ntTSL 4 BASIC25.01■■□□□ 1.59
NKX3-2P78367 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.01■■□□□ 1.59
NKX3-2P78367 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
NKX3-2P78367 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
NKX3-2P78367 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
NKX3-2P78367 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
NKX3-2P78367 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
NKX3-2P78367 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
NKX3-2P78367 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC25■■□□□ 1.59
NKX3-2P78367 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
NKX3-2P78367 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC25■■□□□ 1.59
NKX3-2P78367 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC25■■□□□ 1.59
NKX3-2P78367 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC25■■□□□ 1.59
NKX3-2P78367 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC25■■□□□ 1.59
NKX3-2P78367 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC25■■□□□ 1.59
NKX3-2P78367 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC25■■□□□ 1.59
NKX3-2P78367 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
NKX3-2P78367 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
NKX3-2P78367 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25■■□□□ 1.59
NKX3-2P78367 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25■■□□□ 1.59
NKX3-2P78367 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
NKX3-2P78367 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
NKX3-2P78367 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
NKX3-2P78367 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
NKX3-2P78367 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
NKX3-2P78367 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
NKX3-2P78367 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
NKX3-2P78367 MPST-204ENST00000404393 1329 ntTSL 5 BASIC24.99■■□□□ 1.59
NKX3-2P78367 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
NKX3-2P78367 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
NKX3-2P78367 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC24.99■■□□□ 1.59
NKX3-2P78367 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC24.99■■□□□ 1.59
NKX3-2P78367 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC24.99■■□□□ 1.59
NKX3-2P78367 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
NKX3-2P78367 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
NKX3-2P78367 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
NKX3-2P78367 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
NKX3-2P78367 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC24.98■■□□□ 1.59
NKX3-2P78367 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
NKX3-2P78367 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC24.98■■□□□ 1.59
NKX3-2P78367 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms