Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CKS1BP61024 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CKS1BP61024 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CKS1BP61024 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CKS1BP61024 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CKS1BP61024 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CKS1BP61024 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CKS1BP61024 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC15.52■□□□□ 0.08
CKS1BP61024 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
CKS1BP61024 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CKS1BP61024 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
CKS1BP61024 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC15.52■□□□□ 0.07
CKS1BP61024 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CKS1BP61024 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CKS1BP61024 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CKS1BP61024 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CKS1BP61024 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CKS1BP61024 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CKS1BP61024 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CKS1BP61024 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
CKS1BP61024 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC15.51■□□□□ 0.07
CKS1BP61024 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC15.51■□□□□ 0.07
CKS1BP61024 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CKS1BP61024 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
CKS1BP61024 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CKS1BP61024 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CKS1BP61024 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
CKS1BP61024 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CKS1BP61024 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CKS1BP61024 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CKS1BP61024 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CKS1BP61024 RP9P-202ENST00000450133 1212 ntBASIC15.5■□□□□ 0.07
CKS1BP61024 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CKS1BP61024 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC15.5■□□□□ 0.07
CKS1BP61024 SHD-204ENST00000599689 1729 ntTSL 5 BASIC15.5■□□□□ 0.07
CKS1BP61024 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CKS1BP61024 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CKS1BP61024 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CKS1BP61024 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC15.5■□□□□ 0.07
CKS1BP61024 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CKS1BP61024 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CKS1BP61024 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CKS1BP61024 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC15.5■□□□□ 0.07
CKS1BP61024 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CKS1BP61024 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CKS1BP61024 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC15.49■□□□□ 0.07
CKS1BP61024 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CKS1BP61024 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CKS1BP61024 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CKS1BP61024 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CKS1BP61024 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
CKS1BP61024 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CKS1BP61024 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC15.49■□□□□ 0.07
CKS1BP61024 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CKS1BP61024 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CKS1BP61024 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CKS1BP61024 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC15.48■□□□□ 0.07
CKS1BP61024 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CKS1BP61024 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
CKS1BP61024 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CKS1BP61024 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CKS1BP61024 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC15.48■□□□□ 0.07
CKS1BP61024 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC15.48■□□□□ 0.07
CKS1BP61024 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC15.48■□□□□ 0.07
CKS1BP61024 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CKS1BP61024 HLA-L-211ENST00000482052 1765 ntBASIC15.48■□□□□ 0.07
CKS1BP61024 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC15.48■□□□□ 0.07
CKS1BP61024 EP400NL-214ENST00000641289 2402 ntBASIC15.48■□□□□ 0.07
CKS1BP61024 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC15.48■□□□□ 0.07
CKS1BP61024 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CKS1BP61024 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CKS1BP61024 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CKS1BP61024 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 AC137767.1-201ENST00000602918 1920 ntBASIC15.47■□□□□ 0.07
CKS1BP61024 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
CKS1BP61024 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC15.47■□□□□ 0.07
CKS1BP61024 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 ECEL1P2-201ENST00000461596 1295 ntBASIC15.47■□□□□ 0.07
CKS1BP61024 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
CKS1BP61024 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC15.47■□□□□ 0.07
CKS1BP61024 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CKS1BP61024 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
CKS1BP61024 ME2-208ENST00000638937 2471 ntTSL 5 BASIC15.46■□□□□ 0.07
CKS1BP61024 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CKS1BP61024 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CKS1BP61024 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CKS1BP61024 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CKS1BP61024 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CKS1BP61024 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms