Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL18A1P39060 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL18A1P39060 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC30.13■■■□□ 2.41
COL18A1P39060 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC30.13■■■□□ 2.41
COL18A1P39060 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC30.13■■■□□ 2.41
COL18A1P39060 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC30.13■■■□□ 2.41
COL18A1P39060 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL18A1P39060 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
COL18A1P39060 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
COL18A1P39060 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
COL18A1P39060 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
COL18A1P39060 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC30.11■■■□□ 2.41
COL18A1P39060 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL18A1P39060 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC30.11■■■□□ 2.41
COL18A1P39060 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC30.11■■■□□ 2.41
COL18A1P39060 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC30.11■■■□□ 2.41
COL18A1P39060 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL18A1P39060 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL18A1P39060 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL18A1P39060 NT5C3AP1-201ENST00000394500 1012 ntBASIC30.1■■■□□ 2.41
COL18A1P39060 RAP2CP1-201ENST00000605103 478 ntBASIC30.1■■■□□ 2.41
COL18A1P39060 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL18A1P39060 AC145676.1-201ENST00000514988 2004 ntBASIC30.1■■■□□ 2.41
COL18A1P39060 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC30.1■■■□□ 2.41
COL18A1P39060 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
COL18A1P39060 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC30.09■■■□□ 2.41
COL18A1P39060 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
COL18A1P39060 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC30.09■■■□□ 2.41
COL18A1P39060 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
COL18A1P39060 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC30.09■■■□□ 2.41
COL18A1P39060 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
COL18A1P39060 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
COL18A1P39060 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
COL18A1P39060 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
COL18A1P39060 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC30.08■■■□□ 2.41
COL18A1P39060 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC30.08■■■□□ 2.41
COL18A1P39060 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
COL18A1P39060 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC30.08■■■□□ 2.41
COL18A1P39060 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
COL18A1P39060 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
COL18A1P39060 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
COL18A1P39060 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC30.08■■■□□ 2.41
COL18A1P39060 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
COL18A1P39060 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
COL18A1P39060 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC30.08■■■□□ 2.41
COL18A1P39060 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL18A1P39060 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC30.07■■■□□ 2.4
COL18A1P39060 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL18A1P39060 TPRG1LP1-201ENST00000598702 760 ntBASIC30.07■■■□□ 2.4
COL18A1P39060 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
COL18A1P39060 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
COL18A1P39060 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL18A1P39060 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL18A1P39060 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
COL18A1P39060 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL18A1P39060 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL18A1P39060 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC30.06■■■□□ 2.4
COL18A1P39060 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC30.06■■■□□ 2.4
COL18A1P39060 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC30.06■■■□□ 2.4
COL18A1P39060 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC30.06■■■□□ 2.4
COL18A1P39060 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL18A1P39060 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL18A1P39060 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC30.05■■■□□ 2.4
COL18A1P39060 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL18A1P39060 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC30.05■■■□□ 2.4
COL18A1P39060 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC30.05■■■□□ 2.4
COL18A1P39060 LHPP-203ENST00000392757 840 ntTSL 3 BASIC30.05■■■□□ 2.4
COL18A1P39060 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC30.05■■■□□ 2.4
COL18A1P39060 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC30.05■■■□□ 2.4
COL18A1P39060 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC30.05■■■□□ 2.4
COL18A1P39060 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC30.04■■■□□ 2.4
COL18A1P39060 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
COL18A1P39060 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC30.04■■■□□ 2.4
COL18A1P39060 NTF6G-201ENST00000591094 616 ntBASIC30.04■■■□□ 2.4
COL18A1P39060 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
COL18A1P39060 SHF-207ENST00000560540 2062 ntTSL 5 BASIC30.04■■■□□ 2.4
COL18A1P39060 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC30.03■■■□□ 2.4
COL18A1P39060 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL18A1P39060 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
COL18A1P39060 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC30.03■■■□□ 2.4
COL18A1P39060 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL18A1P39060 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC30.03■■■□□ 2.4
COL18A1P39060 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
COL18A1P39060 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC30.02■■■□□ 2.4
COL18A1P39060 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC30.02■■■□□ 2.4
COL18A1P39060 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
COL18A1P39060 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC30.02■■■□□ 2.4
COL18A1P39060 HLA-L-209ENST00000420110 1011 ntBASIC30.02■■■□□ 2.4
COL18A1P39060 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
COL18A1P39060 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
COL18A1P39060 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
COL18A1P39060 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC30.01■■■□□ 2.4
COL18A1P39060 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
COL18A1P39060 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC30.01■■■□□ 2.39
COL18A1P39060 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC30.01■■■□□ 2.39
COL18A1P39060 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC30.01■■■□□ 2.39
COL18A1P39060 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
COL18A1P39060 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC30■■■□□ 2.39
COL18A1P39060 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
COL18A1P39060 AC006015.1-201ENST00000429970 570 ntBASIC30■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms