Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.66■□□□□ 0.74
COL8A1P27658 AC091060.1-201ENST00000623524 1766 ntBASIC19.66■□□□□ 0.74
COL8A1P27658 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.66■□□□□ 0.74
COL8A1P27658 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL8A1P27658 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.66■□□□□ 0.74
COL8A1P27658 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.66■□□□□ 0.74
COL8A1P27658 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.66■□□□□ 0.74
COL8A1P27658 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.66■□□□□ 0.74
COL8A1P27658 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL8A1P27658 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.65■□□□□ 0.74
COL8A1P27658 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL8A1P27658 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL8A1P27658 MIR663A-201ENST00000385250 93 ntBASIC19.65■□□□□ 0.74
COL8A1P27658 GPX1P1-201ENST00000388829 606 ntBASIC19.65■□□□□ 0.74
COL8A1P27658 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.65■□□□□ 0.74
COL8A1P27658 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.65■□□□□ 0.74
COL8A1P27658 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.65■□□□□ 0.74
COL8A1P27658 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.65■□□□□ 0.74
COL8A1P27658 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
COL8A1P27658 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL8A1P27658 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.65■□□□□ 0.74
COL8A1P27658 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL8A1P27658 MIR4651-201ENST00000582622 73 ntBASIC19.64■□□□□ 0.73
COL8A1P27658 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.64■□□□□ 0.73
COL8A1P27658 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.64■□□□□ 0.73
COL8A1P27658 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.64■□□□□ 0.73
COL8A1P27658 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL8A1P27658 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL8A1P27658 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC19.63■□□□□ 0.73
COL8A1P27658 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL8A1P27658 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
COL8A1P27658 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.63■□□□□ 0.73
COL8A1P27658 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL8A1P27658 AC010525.1-201ENST00000585559 441 ntBASIC19.63■□□□□ 0.73
COL8A1P27658 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL8A1P27658 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.63■□□□□ 0.73
COL8A1P27658 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.63■□□□□ 0.73
COL8A1P27658 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
COL8A1P27658 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
COL8A1P27658 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL8A1P27658 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL8A1P27658 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.62■□□□□ 0.73
COL8A1P27658 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.62■□□□□ 0.73
COL8A1P27658 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.62■□□□□ 0.73
COL8A1P27658 ERN1-208ENST00000606895 2068 ntBASIC19.62■□□□□ 0.73
COL8A1P27658 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.62■□□□□ 0.73
COL8A1P27658 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
COL8A1P27658 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL8A1P27658 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL8A1P27658 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
COL8A1P27658 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.61■□□□□ 0.73
COL8A1P27658 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL8A1P27658 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC19.61■□□□□ 0.73
COL8A1P27658 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL8A1P27658 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL8A1P27658 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.61■□□□□ 0.73
COL8A1P27658 KRT18P6-201ENST00000555540 1265 ntBASIC19.61■□□□□ 0.73
COL8A1P27658 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.61■□□□□ 0.73
COL8A1P27658 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL8A1P27658 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL8A1P27658 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL8A1P27658 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL8A1P27658 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL8A1P27658 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL8A1P27658 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL8A1P27658 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.6■□□□□ 0.73
COL8A1P27658 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL8A1P27658 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.6■□□□□ 0.73
COL8A1P27658 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL8A1P27658 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL8A1P27658 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL8A1P27658 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
COL8A1P27658 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL8A1P27658 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
COL8A1P27658 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL8A1P27658 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL8A1P27658 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
COL8A1P27658 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
COL8A1P27658 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.59■□□□□ 0.73
COL8A1P27658 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.59■□□□□ 0.73
COL8A1P27658 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL8A1P27658 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
COL8A1P27658 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.59■□□□□ 0.73
COL8A1P27658 AC105233.4-201ENST00000642045 216 ntBASIC19.59■□□□□ 0.73
COL8A1P27658 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
COL8A1P27658 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL8A1P27658 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL8A1P27658 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL8A1P27658 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.59■□□□□ 0.73
COL8A1P27658 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL8A1P27658 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.59■□□□□ 0.73
COL8A1P27658 AC004854.2-201ENST00000608450 1441 ntBASIC19.59■□□□□ 0.73
COL8A1P27658 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL8A1P27658 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL8A1P27658 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
COL8A1P27658 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.58■□□□□ 0.73
COL8A1P27658 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL8A1P27658 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL8A1P27658 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
COL8A1P27658 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms