Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
COL5A1P20908 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
COL5A1P20908 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.8■■□□□ 1.08
COL5A1P20908 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
COL5A1P20908 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.79■■□□□ 1.08
COL5A1P20908 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A1P20908 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
COL5A1P20908 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A1P20908 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A1P20908 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.79■■□□□ 1.08
COL5A1P20908 AC004911.1-201ENST00000416316 871 ntBASIC21.79■■□□□ 1.08
COL5A1P20908 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.79■■□□□ 1.08
COL5A1P20908 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.79■■□□□ 1.08
COL5A1P20908 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.79■■□□□ 1.08
COL5A1P20908 AL499627.2-201ENST00000606283 725 ntBASIC21.79■■□□□ 1.08
COL5A1P20908 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.79■■□□□ 1.08
COL5A1P20908 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A1P20908 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A1P20908 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
COL5A1P20908 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.78■■□□□ 1.08
COL5A1P20908 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.78■■□□□ 1.08
COL5A1P20908 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A1P20908 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.78■■□□□ 1.08
COL5A1P20908 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A1P20908 AC133637.1-201ENST00000624115 1537 ntBASIC21.78■■□□□ 1.08
COL5A1P20908 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A1P20908 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A1P20908 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL5A1P20908 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
COL5A1P20908 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
COL5A1P20908 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
COL5A1P20908 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.77■■□□□ 1.08
COL5A1P20908 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.77■■□□□ 1.08
COL5A1P20908 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A1P20908 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A1P20908 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A1P20908 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL5A1P20908 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
COL5A1P20908 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
COL5A1P20908 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
COL5A1P20908 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A1P20908 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.76■■□□□ 1.07
COL5A1P20908 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.76■■□□□ 1.07
COL5A1P20908 AC010525.1-201ENST00000585559 441 ntBASIC21.76■■□□□ 1.07
COL5A1P20908 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A1P20908 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A1P20908 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A1P20908 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL5A1P20908 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.76■■□□□ 1.07
COL5A1P20908 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
COL5A1P20908 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.76■■□□□ 1.07
COL5A1P20908 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A1P20908 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A1P20908 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.75■■□□□ 1.07
COL5A1P20908 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A1P20908 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A1P20908 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.75■■□□□ 1.07
COL5A1P20908 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A1P20908 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL5A1P20908 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.74■■□□□ 1.07
COL5A1P20908 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.74■■□□□ 1.07
COL5A1P20908 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.74■■□□□ 1.07
COL5A1P20908 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.74■■□□□ 1.07
COL5A1P20908 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL5A1P20908 AC022211.4-201ENST00000625094 2161 ntBASIC21.74■■□□□ 1.07
COL5A1P20908 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A1P20908 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A1P20908 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.73■■□□□ 1.07
COL5A1P20908 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A1P20908 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A1P20908 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.73■■□□□ 1.07
COL5A1P20908 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.73■■□□□ 1.07
COL5A1P20908 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A1P20908 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.73■■□□□ 1.07
COL5A1P20908 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A1P20908 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A1P20908 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
COL5A1P20908 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A1P20908 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL5A1P20908 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.73■■□□□ 1.07
COL5A1P20908 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A1P20908 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A1P20908 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.72■■□□□ 1.07
COL5A1P20908 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.72■■□□□ 1.07
COL5A1P20908 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A1P20908 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.71■■□□□ 1.07
COL5A1P20908 HLA-L-211ENST00000482052 1765 ntBASIC21.71■■□□□ 1.07
COL5A1P20908 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
COL5A1P20908 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A1P20908 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.71■■□□□ 1.07
COL5A1P20908 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A1P20908 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A1P20908 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.71■■□□□ 1.07
COL5A1P20908 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A1P20908 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.71■■□□□ 1.07
COL5A1P20908 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
COL5A1P20908 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A1P20908 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A1P20908 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.71■■□□□ 1.07
COL5A1P20908 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms