Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.25■□□□□ 0.99
PROM1O43490 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PROM1O43490 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
PROM1O43490 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PROM1O43490 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PROM1O43490 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PROM1O43490 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
PROM1O43490 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PROM1O43490 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.24■□□□□ 0.99
PROM1O43490 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PROM1O43490 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PROM1O43490 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.24■□□□□ 0.99
PROM1O43490 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
PROM1O43490 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.24■□□□□ 0.99
PROM1O43490 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.24■□□□□ 0.99
PROM1O43490 AC009102.2-201ENST00000606772 1639 ntBASIC21.24■□□□□ 0.99
PROM1O43490 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PROM1O43490 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PROM1O43490 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PROM1O43490 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.24■□□□□ 0.99
PROM1O43490 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PROM1O43490 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.23■□□□□ 0.99
PROM1O43490 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PROM1O43490 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PROM1O43490 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.23■□□□□ 0.99
PROM1O43490 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.23■□□□□ 0.99
PROM1O43490 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PROM1O43490 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PROM1O43490 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.23■□□□□ 0.99
PROM1O43490 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PROM1O43490 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.23■□□□□ 0.99
PROM1O43490 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PROM1O43490 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.22■□□□□ 0.99
PROM1O43490 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PROM1O43490 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PROM1O43490 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PROM1O43490 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.22■□□□□ 0.99
PROM1O43490 AL117332.1-201ENST00000622628 974 ntBASIC21.22■□□□□ 0.99
PROM1O43490 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.22■□□□□ 0.99
PROM1O43490 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PROM1O43490 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PROM1O43490 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PROM1O43490 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PROM1O43490 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PROM1O43490 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PROM1O43490 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PROM1O43490 DUSP8P3-201ENST00000399571 1760 ntBASIC21.21■□□□□ 0.99
PROM1O43490 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
PROM1O43490 MIR3621-201ENST00000580529 85 ntBASIC21.21■□□□□ 0.99
PROM1O43490 AL356740.2-201ENST00000601559 647 ntBASIC21.21■□□□□ 0.99
PROM1O43490 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
PROM1O43490 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PROM1O43490 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.99
PROM1O43490 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PROM1O43490 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
PROM1O43490 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PROM1O43490 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PROM1O43490 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PROM1O43490 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
PROM1O43490 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.2■□□□□ 0.98
PROM1O43490 AC144652.1-201ENST00000609974 1624 ntBASIC21.2■□□□□ 0.98
PROM1O43490 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PROM1O43490 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PROM1O43490 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.2■□□□□ 0.98
PROM1O43490 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PROM1O43490 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.2■□□□□ 0.98
PROM1O43490 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.2■□□□□ 0.98
PROM1O43490 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PROM1O43490 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.19■□□□□ 0.98
PROM1O43490 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PROM1O43490 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.19■□□□□ 0.98
PROM1O43490 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PROM1O43490 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PROM1O43490 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.19■□□□□ 0.98
PROM1O43490 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PROM1O43490 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PROM1O43490 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
PROM1O43490 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PROM1O43490 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PROM1O43490 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PROM1O43490 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PROM1O43490 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
PROM1O43490 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
PROM1O43490 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.18■□□□□ 0.98
PROM1O43490 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PROM1O43490 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PROM1O43490 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
PROM1O43490 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
PROM1O43490 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PROM1O43490 AC068473.5-201ENST00000616428 2072 ntBASIC21.17■□□□□ 0.98
PROM1O43490 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PROM1O43490 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PROM1O43490 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PROM1O43490 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.17■□□□□ 0.98
PROM1O43490 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PROM1O43490 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.17■□□□□ 0.98
PROM1O43490 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PROM1O43490 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
PROM1O43490 FP325331.1-202ENST00000623531 1380 ntBASIC21.17■□□□□ 0.98
PROM1O43490 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms