Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC26.86■■□□□ 1.89
Vps28Q9D1C8 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
Vps28Q9D1C8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Vps28Q9D1C8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Vps28Q9D1C8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Vps28Q9D1C8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Vps28Q9D1C8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC26.78■■□□□ 1.88
Vps28Q9D1C8 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC26.78■■□□□ 1.88
Vps28Q9D1C8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Vps28Q9D1C8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Vps28Q9D1C8 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
Vps28Q9D1C8 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Vps28Q9D1C8 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC26.73■■□□□ 1.87
Vps28Q9D1C8 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Vps28Q9D1C8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Vps28Q9D1C8 Peli2-204ENSMUST00000226513 1320 ntBASIC26.69■■□□□ 1.86
Vps28Q9D1C8 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Vps28Q9D1C8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC26.67■■□□□ 1.86
Vps28Q9D1C8 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Vps28Q9D1C8 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Vps28Q9D1C8 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Vps28Q9D1C8 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Vps28Q9D1C8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
Vps28Q9D1C8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC26.64■■□□□ 1.85
Vps28Q9D1C8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
Vps28Q9D1C8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
Vps28Q9D1C8 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
Vps28Q9D1C8 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
Vps28Q9D1C8 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Vps28Q9D1C8 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
Vps28Q9D1C8 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Vps28Q9D1C8 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
Vps28Q9D1C8 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC26.58■■□□□ 1.85
Vps28Q9D1C8 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Vps28Q9D1C8 Gm16148-201ENSMUST00000119653 893 ntBASIC26.57■■□□□ 1.84
Vps28Q9D1C8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
Vps28Q9D1C8 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC26.54■■□□□ 1.84
Vps28Q9D1C8 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Vps28Q9D1C8 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Vps28Q9D1C8 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Vps28Q9D1C8 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Vps28Q9D1C8 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Vps28Q9D1C8 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.83
Vps28Q9D1C8 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Vps28Q9D1C8 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Vps28Q9D1C8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Vps28Q9D1C8 Zfp131-205ENSMUST00000223812 663 ntBASIC26.42■■□□□ 1.82
Vps28Q9D1C8 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Vps28Q9D1C8 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Vps28Q9D1C8 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC26.39■■□□□ 1.82
Vps28Q9D1C8 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Vps28Q9D1C8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Vps28Q9D1C8 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
Vps28Q9D1C8 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Vps28Q9D1C8 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Vps28Q9D1C8 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Vps28Q9D1C8 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC26.33■■□□□ 1.81
Vps28Q9D1C8 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC26.32■■□□□ 1.8
Vps28Q9D1C8 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Vps28Q9D1C8 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Vps28Q9D1C8 Gm2415-204ENSMUST00000190235 2004 ntBASIC26.31■■□□□ 1.8
Vps28Q9D1C8 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Vps28Q9D1C8 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Vps28Q9D1C8 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Vps28Q9D1C8 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
Vps28Q9D1C8 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Vps28Q9D1C8 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Vps28Q9D1C8 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC26.25■■□□□ 1.79
Vps28Q9D1C8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Vps28Q9D1C8 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC26.23■■□□□ 1.79
Vps28Q9D1C8 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC26.23■■□□□ 1.79
Vps28Q9D1C8 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Vps28Q9D1C8 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Vps28Q9D1C8 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Vps28Q9D1C8 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Vps28Q9D1C8 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Vps28Q9D1C8 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Vps28Q9D1C8 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
Vps28Q9D1C8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Vps28Q9D1C8 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Vps28Q9D1C8 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Vps28Q9D1C8 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC26.17■■□□□ 1.78
Vps28Q9D1C8 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Vps28Q9D1C8 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Vps28Q9D1C8 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Vps28Q9D1C8 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
Vps28Q9D1C8 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC26.14■■□□□ 1.78
Vps28Q9D1C8 Gm6658-202ENSMUST00000209493 1885 ntBASIC26.13■■□□□ 1.77
Vps28Q9D1C8 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Vps28Q9D1C8 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
Vps28Q9D1C8 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC26.12■■□□□ 1.77
Vps28Q9D1C8 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC26.12■■□□□ 1.77
Vps28Q9D1C8 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC26.12■■□□□ 1.77
Vps28Q9D1C8 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
Vps28Q9D1C8 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC26.09■■□□□ 1.77
Vps28Q9D1C8 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Vps28Q9D1C8 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Vps28Q9D1C8 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Vps28Q9D1C8 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Vps28Q9D1C8 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC26.04■■□□□ 1.76
Retrieved 100 of 76,532 protein–RNA pairs in 8.5 ms