Protein–RNA interactions for Protein: P40965

MSH4, MutS protein homolog 4, yeastyeast

Predicted RBP Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH4P40965 BOP3YNL042W 1191 nt12.78□□□□□ -0.36
MSH4P40965 YLL053CYLL053C 459 nt12.77□□□□□ -0.37
MSH4P40965 NCP1YHR042W 2076 nt12.75□□□□□ -0.37
MSH4P40965 AQY1YPR192W 918 nt12.73□□□□□ -0.37
MSH4P40965 FTR1YER145C 1215 nt12.7□□□□□ -0.38
MSH4P40965 SBA1YKL117W 651 nt12.7□□□□□ -0.38
MSH4P40965 YFL066CYFL066C 1179 nt12.67□□□□□ -0.38
MSH4P40965 GAL1YBR020W 1587 nt12.67□□□□□ -0.38
MSH4P40965 PEX25YPL112C 1185 nt12.66□□□□□ -0.38
MSH4P40965 TRM5YHR070W 1500 nt12.64□□□□□ -0.39
MSH4P40965 YLR415CYLR415C 339 nt12.62□□□□□ -0.39
MSH4P40965 BOR1YNL275W 1731 nt12.62□□□□□ -0.39
MSH4P40965 ERF2YLR246W 1080 nt12.6□□□□□ -0.39
MSH4P40965 NAT4YMR069W 858 nt12.6□□□□□ -0.39
MSH4P40965 STB1YNL309W 1263 nt12.59□□□□□ -0.39
MSH4P40965 YNL115CYNL115C 1935 nt12.58□□□□□ -0.39
MSH4P40965 BDH1YAL060W 1149 nt12.58□□□□□ -0.4
MSH4P40965 ATF2YGR177C 1608 nt12.58□□□□□ -0.4
MSH4P40965 CRR1YLR213C 1269 nt12.57□□□□□ -0.4
MSH4P40965 DDR2YOL052C-A 186 nt12.57□□□□□ -0.4
MSH4P40965 GLK1YCL040W 1503 nt12.57□□□□□ -0.4
MSH4P40965 YDR524C-BYDR524C-B 201 nt12.56□□□□□ -0.4
MSH4P40965 YSP3YOR003W 1437 nt12.55□□□□□ -0.4
MSH4P40965 SWC5YBR231C 912 nt12.55□□□□□ -0.4
MSH4P40965 CCT4YDL143W 1587 nt12.55□□□□□ -0.4
MSH4P40965 GPI16YHR188C 1833 nt12.54□□□□□ -0.4
MSH4P40965 SPC25YER018C 666 nt12.54□□□□□ -0.4
MSH4P40965 LYS4YDR234W 2082 nt12.53□□□□□ -0.4
MSH4P40965 YJL225CYJL225C 5277 nt12.53□□□□□ -0.4
MSH4P40965 YFL067WYFL067W 528 nt12.52□□□□□ -0.41
MSH4P40965 VPS60YDR486C 690 nt12.47□□□□□ -0.41
MSH4P40965 YFL054CYFL054C 1941 nt12.46□□□□□ -0.42
MSH4P40965 YDL086C-AYDL086C-A 435 nt12.45□□□□□ -0.42
MSH4P40965 MCH5YOR306C 1566 nt12.44□□□□□ -0.42
MSH4P40965 SNG1YGR197C 1644 nt12.43□□□□□ -0.42
MSH4P40965 HEM12YDR047W 1089 nt12.42□□□□□ -0.42
MSH4P40965 MIC10YCL057C-A 294 nt12.42□□□□□ -0.42
MSH4P40965 MSF1YPR047W 1410 nt12.42□□□□□ -0.42
MSH4P40965 THI74YDR438W 1113 nt12.41□□□□□ -0.42
MSH4P40965 ANP1YEL036C 1503 nt12.41□□□□□ -0.42
MSH4P40965 SPT8YLR055C 1809 nt12.4□□□□□ -0.42
MSH4P40965 VPS75YNL246W 795 nt12.4□□□□□ -0.42
MSH4P40965 FEN2YCR028C 1539 nt12.4□□□□□ -0.42
MSH4P40965 ALG3YBL082C 1377 nt12.38□□□□□ -0.43
MSH4P40965 MIR1YJR077C 936 nt12.37□□□□□ -0.43
MSH4P40965 PAU7YAR020C 168 nt12.35□□□□□ -0.43
MSH4P40965 TIM17YJL143W 477 nt12.28□□□□□ -0.44
MSH4P40965 YIR016WYIR016W 798 nt12.27□□□□□ -0.45
MSH4P40965 YHR056W-AYHR056W-A 435 nt12.26□□□□□ -0.45
MSH4P40965 DAT1YML113W 747 nt12.24□□□□□ -0.45
MSH4P40965 SWE1YJL187C 2460 nt12.2□□□□□ -0.46
MSH4P40965 BNA2YJR078W 1362 nt12.18□□□□□ -0.46
MSH4P40965 YMR244WYMR244W 1068 nt12.16□□□□□ -0.46
MSH4P40965 UBA4YHR111W 1323 nt12.15□□□□□ -0.46
MSH4P40965 RAX1YOR301W 1308 nt12.15□□□□□ -0.46
MSH4P40965 YGL034CYGL034C 366 nt12.15□□□□□ -0.46
MSH4P40965 MIC12YBR262C 321 nt12.15□□□□□ -0.46
MSH4P40965 ALG12YNR030W 1656 nt12.15□□□□□ -0.46
MSH4P40965 GLR1YPL091W 1452 nt12.14□□□□□ -0.47
MSH4P40965 SHM2YLR058C 1410 nt12.14□□□□□ -0.47
MSH4P40965 YSR3YKR053C 1215 nt12.14□□□□□ -0.47
MSH4P40965 SHB17YKR043C 816 nt12.13□□□□□ -0.47
MSH4P40965 XDJ1YLR090W 1380 nt12.12□□□□□ -0.47
MSH4P40965 NDI1YML120C 1542 nt12.07□□□□□ -0.48
MSH4P40965 SGT2YOR007C 1041 nt12.05□□□□□ -0.48
MSH4P40965 RBG1YAL036C 1110 nt12.04□□□□□ -0.48
MSH4P40965 XYL2YLR070C 1071 nt12.04□□□□□ -0.48
MSH4P40965 GDH3YAL062W 1374 nt12.04□□□□□ -0.48
MSH4P40965 YGR201CYGR201C 678 nt12□□□□□ -0.49
MSH4P40965 HHO1YPL127C 777 nt12□□□□□ -0.49
MSH4P40965 YCR087WYCR087W 516 nt11.99□□□□□ -0.49
MSH4P40965 HSP60YLR259C 1719 nt11.99□□□□□ -0.49
MSH4P40965 PHO89YBR296C 1725 nt11.99□□□□□ -0.49
MSH4P40965 YDR010CYDR010C 333 nt11.98□□□□□ -0.49
MSH4P40965 NIT1YIL164C 600 nt11.98□□□□□ -0.49
MSH4P40965 CCA1YER168C 1641 nt11.97□□□□□ -0.49
MSH4P40965 RBG2YGR173W 1107 nt11.95□□□□□ -0.5
MSH4P40965 RET2YFR051C 1641 nt11.94□□□□□ -0.5
MSH4P40965 AGP1YCL025C 1902 nt11.92□□□□□ -0.5
MSH4P40965 AVT6YER119C 1347 nt11.91□□□□□ -0.5
MSH4P40965 AIM45YPR004C 1035 nt11.91□□□□□ -0.5
MSH4P40965 MRP20YDR405W 792 nt11.88□□□□□ -0.51
MSH4P40965 RDN37-1RDN37-1 5354 nt11.87□□□□□ -0.51
MSH4P40965 RDN37-2RDN37-2 5354 nt11.87□□□□□ -0.51
MSH4P40965 GOR1YNL274C 1053 nt11.86□□□□□ -0.51
MSH4P40965 FUR4YBR021W 1902 nt11.84□□□□□ -0.51
MSH4P40965 DUT1YBR252W 444 nt11.83□□□□□ -0.52
MSH4P40965 YMR226CYMR226C 804 nt11.81□□□□□ -0.52
MSH4P40965 YCR102CYCR102C 1107 nt11.77□□□□□ -0.53
MSH4P40965 COQ2YNR041C 1119 nt11.77□□□□□ -0.53
MSH4P40965 NAR1YNL240C 1476 nt11.76□□□□□ -0.53
MSH4P40965 YLR111WYLR111W 333 nt11.75□□□□□ -0.53
MSH4P40965 YHL019W-AYHL019W-A 594 nt11.72□□□□□ -0.53
MSH4P40965 DUS1YML080W 1272 nt11.7□□□□□ -0.54
MSH4P40965 SFA1YDL168W 1161 nt11.69□□□□□ -0.54
MSH4P40965 SDH5YOL071W 489 nt11.68□□□□□ -0.54
MSH4P40965 RPL4BYDR012W 1089 nt11.67□□□□□ -0.54
MSH4P40965 RPL4AYBR031W 1089 nt11.67□□□□□ -0.54
MSH4P40965 CLB6YGR109C 1143 nt11.66□□□□□ -0.54
MSH4P40965 SAM1YLR180W 1149 nt11.65□□□□□ -0.54
Retrieved 100 of 7,029 protein–RNA pairs in 14.8 ms