Protein–RNA interactions for Protein: O35393

Efnb3, Ephrin-B3, mousemouse

Predictions only

Length 340 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Efnb3O35393 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.43■□□□□ 0.86
Efnb3O35393 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Efnb3O35393 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC20.42■□□□□ 0.86
Efnb3O35393 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Efnb3O35393 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Efnb3O35393 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Efnb3O35393 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC20.38■□□□□ 0.85
Efnb3O35393 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Efnb3O35393 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Efnb3O35393 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Efnb3O35393 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Efnb3O35393 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Efnb3O35393 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Efnb3O35393 Zxda-201ENSMUST00000117281 2621 ntBASIC20.35■□□□□ 0.85
Efnb3O35393 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Efnb3O35393 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Efnb3O35393 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Efnb3O35393 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC20.34■□□□□ 0.85
Efnb3O35393 Gm25262-201ENSMUST00000174934 133 ntBASIC20.33■□□□□ 0.85
Efnb3O35393 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Efnb3O35393 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Efnb3O35393 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC20.3■□□□□ 0.84
Efnb3O35393 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Efnb3O35393 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Efnb3O35393 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Efnb3O35393 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Efnb3O35393 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Efnb3O35393 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Efnb3O35393 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Efnb3O35393 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Efnb3O35393 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Efnb3O35393 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Efnb3O35393 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Efnb3O35393 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Efnb3O35393 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Efnb3O35393 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Efnb3O35393 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Efnb3O35393 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Efnb3O35393 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Efnb3O35393 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Efnb3O35393 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Efnb3O35393 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.21■□□□□ 0.83
Efnb3O35393 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Efnb3O35393 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Efnb3O35393 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Efnb3O35393 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Efnb3O35393 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Efnb3O35393 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Efnb3O35393 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Efnb3O35393 Mipep-204ENSMUST00000225043 1548 ntBASIC20.17■□□□□ 0.82
Efnb3O35393 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Efnb3O35393 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Efnb3O35393 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Efnb3O35393 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Efnb3O35393 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Efnb3O35393 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Efnb3O35393 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
Efnb3O35393 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.13■□□□□ 0.81
Efnb3O35393 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Efnb3O35393 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Efnb3O35393 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Efnb3O35393 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC20.12■□□□□ 0.81
Efnb3O35393 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Efnb3O35393 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Efnb3O35393 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Efnb3O35393 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Efnb3O35393 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Efnb3O35393 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Efnb3O35393 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Efnb3O35393 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Efnb3O35393 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.08■□□□□ 0.81
Efnb3O35393 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Efnb3O35393 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Efnb3O35393 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Efnb3O35393 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Efnb3O35393 AL845457.1-201ENSMUST00000197244 68 ntBASIC20.06■□□□□ 0.8
Efnb3O35393 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Efnb3O35393 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Efnb3O35393 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Efnb3O35393 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Efnb3O35393 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC20.03■□□□□ 0.8
Efnb3O35393 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Efnb3O35393 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Efnb3O35393 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Efnb3O35393 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Efnb3O35393 Amer2-203ENSMUST00000225247 2662 ntBASIC19.97■□□□□ 0.79
Efnb3O35393 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
Efnb3O35393 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
Efnb3O35393 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
Efnb3O35393 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Efnb3O35393 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Efnb3O35393 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Efnb3O35393 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Efnb3O35393 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Efnb3O35393 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Efnb3O35393 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Efnb3O35393 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC19.87■□□□□ 0.77
Efnb3O35393 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC19.86■□□□□ 0.77
Efnb3O35393 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Efnb3O35393 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms