Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trbv1A0A0B4J1G7 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Trbv1A0A0B4J1G7 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trbv1A0A0B4J1G7 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Trbv1A0A0B4J1G7 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trbv1A0A0B4J1G7 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trbv1A0A0B4J1G7 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trbv1A0A0B4J1G7 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC20.17■□□□□ 0.82
Trbv1A0A0B4J1G7 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Trbv1A0A0B4J1G7 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Trbv1A0A0B4J1G7 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trbv1A0A0B4J1G7 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trbv1A0A0B4J1G7 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trbv1A0A0B4J1G7 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trbv1A0A0B4J1G7 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.12■□□□□ 0.81
Trbv1A0A0B4J1G7 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trbv1A0A0B4J1G7 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC20.1■□□□□ 0.81
Trbv1A0A0B4J1G7 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trbv1A0A0B4J1G7 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trbv1A0A0B4J1G7 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC20.09■□□□□ 0.81
Trbv1A0A0B4J1G7 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trbv1A0A0B4J1G7 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trbv1A0A0B4J1G7 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Trbv1A0A0B4J1G7 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Trbv1A0A0B4J1G7 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Trbv1A0A0B4J1G7 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trbv1A0A0B4J1G7 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trbv1A0A0B4J1G7 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
Trbv1A0A0B4J1G7 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Trbv1A0A0B4J1G7 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trbv1A0A0B4J1G7 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trbv1A0A0B4J1G7 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trbv1A0A0B4J1G7 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trbv1A0A0B4J1G7 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Trbv1A0A0B4J1G7 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trbv1A0A0B4J1G7 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trbv1A0A0B4J1G7 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trbv1A0A0B4J1G7 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trbv1A0A0B4J1G7 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trbv1A0A0B4J1G7 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trbv1A0A0B4J1G7 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
Trbv1A0A0B4J1G7 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trbv1A0A0B4J1G7 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trbv1A0A0B4J1G7 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trbv1A0A0B4J1G7 Gm43445-201ENSMUST00000198564 2091 ntBASIC19.94■□□□□ 0.78
Trbv1A0A0B4J1G7 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trbv1A0A0B4J1G7 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trbv1A0A0B4J1G7 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trbv1A0A0B4J1G7 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Trbv1A0A0B4J1G7 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Trbv1A0A0B4J1G7 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trbv1A0A0B4J1G7 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trbv1A0A0B4J1G7 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trbv1A0A0B4J1G7 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.78
Trbv1A0A0B4J1G7 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trbv1A0A0B4J1G7 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trbv1A0A0B4J1G7 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trbv1A0A0B4J1G7 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trbv1A0A0B4J1G7 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trbv1A0A0B4J1G7 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trbv1A0A0B4J1G7 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trbv1A0A0B4J1G7 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC19.85■□□□□ 0.77
Trbv1A0A0B4J1G7 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.85■□□□□ 0.77
Trbv1A0A0B4J1G7 Zfp131-207ENSMUST00000224946 1783 ntBASIC19.85■□□□□ 0.77
Trbv1A0A0B4J1G7 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trbv1A0A0B4J1G7 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trbv1A0A0B4J1G7 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trbv1A0A0B4J1G7 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC19.8■□□□□ 0.76
Trbv1A0A0B4J1G7 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trbv1A0A0B4J1G7 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Trbv1A0A0B4J1G7 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC19.78■□□□□ 0.76
Trbv1A0A0B4J1G7 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trbv1A0A0B4J1G7 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trbv1A0A0B4J1G7 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trbv1A0A0B4J1G7 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC19.75■□□□□ 0.75
Trbv1A0A0B4J1G7 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trbv1A0A0B4J1G7 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trbv1A0A0B4J1G7 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trbv1A0A0B4J1G7 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trbv1A0A0B4J1G7 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trbv1A0A0B4J1G7 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trbv1A0A0B4J1G7 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC19.73■□□□□ 0.75
Trbv1A0A0B4J1G7 Amer2-203ENSMUST00000225247 2662 ntBASIC19.73■□□□□ 0.75
Trbv1A0A0B4J1G7 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Trbv1A0A0B4J1G7 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Trbv1A0A0B4J1G7 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trbv1A0A0B4J1G7 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Trbv1A0A0B4J1G7 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.71■□□□□ 0.75
Trbv1A0A0B4J1G7 Fezf2-202ENSMUST00000224023 1917 ntBASIC19.68■□□□□ 0.74
Trbv1A0A0B4J1G7 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trbv1A0A0B4J1G7 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trbv1A0A0B4J1G7 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trbv1A0A0B4J1G7 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trbv1A0A0B4J1G7 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trbv1A0A0B4J1G7 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trbv1A0A0B4J1G7 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Trbv1A0A0B4J1G7 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trbv1A0A0B4J1G7 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Trbv1A0A0B4J1G7 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trbv1A0A0B4J1G7 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC19.64■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms