Protein–RNA interactions for Protein: A0A075B624

Trav15d-1-dv6d-1, T cell receptor alpha variable 15D-1-DV6D-1 (Fragment), mousemouse

Predictions only

Length 124 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav15d-1-dv6d-1A0A075B624 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Trav15d-1-dv6d-1A0A075B624 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Trav15d-1-dv6d-1A0A075B624 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Trav15d-1-dv6d-1A0A075B624 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC22■■□□□ 1.11
Trav15d-1-dv6d-1A0A075B624 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
Trav15d-1-dv6d-1A0A075B624 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trav15d-1-dv6d-1A0A075B624 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Trav15d-1-dv6d-1A0A075B624 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trav15d-1-dv6d-1A0A075B624 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trav15d-1-dv6d-1A0A075B624 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trav15d-1-dv6d-1A0A075B624 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Trav15d-1-dv6d-1A0A075B624 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Trav15d-1-dv6d-1A0A075B624 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
Trav15d-1-dv6d-1A0A075B624 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav15d-1-dv6d-1A0A075B624 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav15d-1-dv6d-1A0A075B624 Mipep-204ENSMUST00000225043 1548 ntBASIC21.91■■□□□ 1.1
Trav15d-1-dv6d-1A0A075B624 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Trav15d-1-dv6d-1A0A075B624 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trav15d-1-dv6d-1A0A075B624 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.88■■□□□ 1.09
Trav15d-1-dv6d-1A0A075B624 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC21.88■■□□□ 1.09
Trav15d-1-dv6d-1A0A075B624 AL845457.1-201ENSMUST00000197244 68 ntBASIC21.88■■□□□ 1.09
Trav15d-1-dv6d-1A0A075B624 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trav15d-1-dv6d-1A0A075B624 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
Trav15d-1-dv6d-1A0A075B624 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
Trav15d-1-dv6d-1A0A075B624 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC21.85■■□□□ 1.09
Trav15d-1-dv6d-1A0A075B624 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trav15d-1-dv6d-1A0A075B624 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trav15d-1-dv6d-1A0A075B624 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav15d-1-dv6d-1A0A075B624 Gm9905-201ENSMUST00000065740 1845 ntBASIC21.84■■□□□ 1.09
Trav15d-1-dv6d-1A0A075B624 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav15d-1-dv6d-1A0A075B624 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Trav15d-1-dv6d-1A0A075B624 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trav15d-1-dv6d-1A0A075B624 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trav15d-1-dv6d-1A0A075B624 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Trav15d-1-dv6d-1A0A075B624 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trav15d-1-dv6d-1A0A075B624 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trav15d-1-dv6d-1A0A075B624 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trav15d-1-dv6d-1A0A075B624 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trav15d-1-dv6d-1A0A075B624 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC21.76■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Gm6206-201ENSMUST00000133472 2199 ntBASIC21.71■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC21.7■■□□□ 1.07
Trav15d-1-dv6d-1A0A075B624 Zxda-201ENSMUST00000117281 2621 ntBASIC21.7■■□□□ 1.06
Trav15d-1-dv6d-1A0A075B624 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trav15d-1-dv6d-1A0A075B624 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav15d-1-dv6d-1A0A075B624 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav15d-1-dv6d-1A0A075B624 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav15d-1-dv6d-1A0A075B624 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Trav15d-1-dv6d-1A0A075B624 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trav15d-1-dv6d-1A0A075B624 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Trav15d-1-dv6d-1A0A075B624 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trav15d-1-dv6d-1A0A075B624 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC21.64■■□□□ 1.06
Trav15d-1-dv6d-1A0A075B624 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
Trav15d-1-dv6d-1A0A075B624 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Trav15d-1-dv6d-1A0A075B624 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Trav15d-1-dv6d-1A0A075B624 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trav15d-1-dv6d-1A0A075B624 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trav15d-1-dv6d-1A0A075B624 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Trav15d-1-dv6d-1A0A075B624 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Trav15d-1-dv6d-1A0A075B624 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trav15d-1-dv6d-1A0A075B624 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trav15d-1-dv6d-1A0A075B624 Gm43445-201ENSMUST00000198564 2091 ntBASIC21.57■■□□□ 1.04
Trav15d-1-dv6d-1A0A075B624 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trav15d-1-dv6d-1A0A075B624 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trav15d-1-dv6d-1A0A075B624 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
Trav15d-1-dv6d-1A0A075B624 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trav15d-1-dv6d-1A0A075B624 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC21.54■■□□□ 1.04
Trav15d-1-dv6d-1A0A075B624 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Trav15d-1-dv6d-1A0A075B624 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trav15d-1-dv6d-1A0A075B624 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trav15d-1-dv6d-1A0A075B624 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trav15d-1-dv6d-1A0A075B624 Gm25262-201ENSMUST00000174934 133 ntBASIC21.48■■□□□ 1.03
Trav15d-1-dv6d-1A0A075B624 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trav15d-1-dv6d-1A0A075B624 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Trav15d-1-dv6d-1A0A075B624 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav15d-1-dv6d-1A0A075B624 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav15d-1-dv6d-1A0A075B624 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav15d-1-dv6d-1A0A075B624 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC21.46■■□□□ 1.03
Trav15d-1-dv6d-1A0A075B624 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trav15d-1-dv6d-1A0A075B624 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trav15d-1-dv6d-1A0A075B624 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Trav15d-1-dv6d-1A0A075B624 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trav15d-1-dv6d-1A0A075B624 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trav15d-1-dv6d-1A0A075B624 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Trav15d-1-dv6d-1A0A075B624 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC21.4■■□□□ 1.02
Trav15d-1-dv6d-1A0A075B624 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trav15d-1-dv6d-1A0A075B624 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Trav15d-1-dv6d-1A0A075B624 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trav15d-1-dv6d-1A0A075B624 Gm6345-201ENSMUST00000180378 1691 ntBASIC21.37■■□□□ 1.01
Trav15d-1-dv6d-1A0A075B624 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC21.37■■□□□ 1.01
Trav15d-1-dv6d-1A0A075B624 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms