Protein–RNA interactions for Protein: A0A075B624

Trav15d-1-dv6d-1, T cell receptor alpha variable 15D-1-DV6D-1 (Fragment), mousemouse

Predictions only

Length 124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav15d-1-dv6d-1A0A075B624 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
Trav15d-1-dv6d-1A0A075B624 Gm25239-201ENSMUST00000174915 86 ntBASIC29.22■■■□□ 2.27
Trav15d-1-dv6d-1A0A075B624 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Trav15d-1-dv6d-1A0A075B624 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
Trav15d-1-dv6d-1A0A075B624 Psd-208ENSMUST00000224556 2034 ntBASIC27.36■■□□□ 1.97
Trav15d-1-dv6d-1A0A075B624 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Trav15d-1-dv6d-1A0A075B624 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Trav15d-1-dv6d-1A0A075B624 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
Trav15d-1-dv6d-1A0A075B624 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Trav15d-1-dv6d-1A0A075B624 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Trav15d-1-dv6d-1A0A075B624 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Trav15d-1-dv6d-1A0A075B624 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Trav15d-1-dv6d-1A0A075B624 Gm15042-201ENSMUST00000120212 883 ntBASIC26.35■■□□□ 1.81
Trav15d-1-dv6d-1A0A075B624 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Trav15d-1-dv6d-1A0A075B624 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trav15d-1-dv6d-1A0A075B624 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Trav15d-1-dv6d-1A0A075B624 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC26.11■■□□□ 1.77
Trav15d-1-dv6d-1A0A075B624 Gm15045-201ENSMUST00000117359 883 ntBASIC25.86■■□□□ 1.73
Trav15d-1-dv6d-1A0A075B624 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
Trav15d-1-dv6d-1A0A075B624 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Trav15d-1-dv6d-1A0A075B624 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Trav15d-1-dv6d-1A0A075B624 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
Trav15d-1-dv6d-1A0A075B624 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Trav15d-1-dv6d-1A0A075B624 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
Trav15d-1-dv6d-1A0A075B624 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Trav15d-1-dv6d-1A0A075B624 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trav15d-1-dv6d-1A0A075B624 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC25.32■■□□□ 1.64
Trav15d-1-dv6d-1A0A075B624 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trav15d-1-dv6d-1A0A075B624 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trav15d-1-dv6d-1A0A075B624 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Trav15d-1-dv6d-1A0A075B624 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Trav15d-1-dv6d-1A0A075B624 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC25.22■■□□□ 1.63
Trav15d-1-dv6d-1A0A075B624 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Trav15d-1-dv6d-1A0A075B624 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
Trav15d-1-dv6d-1A0A075B624 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC25.03■■□□□ 1.6
Trav15d-1-dv6d-1A0A075B624 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Trav15d-1-dv6d-1A0A075B624 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
Trav15d-1-dv6d-1A0A075B624 Gm24109-201ENSMUST00000175489 103 ntBASIC24.93■■□□□ 1.58
Trav15d-1-dv6d-1A0A075B624 Gm10524-201ENSMUST00000181931 1893 ntBASIC24.89■■□□□ 1.58
Trav15d-1-dv6d-1A0A075B624 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC24.82■■□□□ 1.56
Trav15d-1-dv6d-1A0A075B624 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Trav15d-1-dv6d-1A0A075B624 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Trav15d-1-dv6d-1A0A075B624 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Trav15d-1-dv6d-1A0A075B624 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Trav15d-1-dv6d-1A0A075B624 Gm23366-201ENSMUST00000175022 89 ntBASIC24.56■■□□□ 1.52
Trav15d-1-dv6d-1A0A075B624 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC24.5■■□□□ 1.51
Trav15d-1-dv6d-1A0A075B624 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Trav15d-1-dv6d-1A0A075B624 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trav15d-1-dv6d-1A0A075B624 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Trav15d-1-dv6d-1A0A075B624 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Trav15d-1-dv6d-1A0A075B624 Gm42596-201ENSMUST00000196305 1958 ntBASIC24.36■■□□□ 1.49
Trav15d-1-dv6d-1A0A075B624 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Trav15d-1-dv6d-1A0A075B624 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Trav15d-1-dv6d-1A0A075B624 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Trav15d-1-dv6d-1A0A075B624 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trav15d-1-dv6d-1A0A075B624 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
Trav15d-1-dv6d-1A0A075B624 AC153911.1-202ENSMUST00000218534 1034 ntBASIC24.2■■□□□ 1.46
Trav15d-1-dv6d-1A0A075B624 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trav15d-1-dv6d-1A0A075B624 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Trav15d-1-dv6d-1A0A075B624 CT025624.2-201ENSMUST00000223609 1909 ntBASIC24.16■■□□□ 1.46
Trav15d-1-dv6d-1A0A075B624 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
Trav15d-1-dv6d-1A0A075B624 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
Trav15d-1-dv6d-1A0A075B624 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Trav15d-1-dv6d-1A0A075B624 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Trav15d-1-dv6d-1A0A075B624 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trav15d-1-dv6d-1A0A075B624 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Trav15d-1-dv6d-1A0A075B624 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Trav15d-1-dv6d-1A0A075B624 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trav15d-1-dv6d-1A0A075B624 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
Trav15d-1-dv6d-1A0A075B624 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
Trav15d-1-dv6d-1A0A075B624 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Trav15d-1-dv6d-1A0A075B624 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trav15d-1-dv6d-1A0A075B624 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trav15d-1-dv6d-1A0A075B624 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trav15d-1-dv6d-1A0A075B624 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
Trav15d-1-dv6d-1A0A075B624 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trav15d-1-dv6d-1A0A075B624 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trav15d-1-dv6d-1A0A075B624 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC23.71■■□□□ 1.39
Trav15d-1-dv6d-1A0A075B624 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trav15d-1-dv6d-1A0A075B624 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Trav15d-1-dv6d-1A0A075B624 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC23.6■■□□□ 1.37
Trav15d-1-dv6d-1A0A075B624 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Trav15d-1-dv6d-1A0A075B624 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trav15d-1-dv6d-1A0A075B624 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Trav15d-1-dv6d-1A0A075B624 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
Trav15d-1-dv6d-1A0A075B624 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC23.49■■□□□ 1.35
Trav15d-1-dv6d-1A0A075B624 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Trav15d-1-dv6d-1A0A075B624 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC23.45■■□□□ 1.34
Trav15d-1-dv6d-1A0A075B624 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Trav15d-1-dv6d-1A0A075B624 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trav15d-1-dv6d-1A0A075B624 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trav15d-1-dv6d-1A0A075B624 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trav15d-1-dv6d-1A0A075B624 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Trav15d-1-dv6d-1A0A075B624 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trav15d-1-dv6d-1A0A075B624 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trav15d-1-dv6d-1A0A075B624 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trav15d-1-dv6d-1A0A075B624 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trav15d-1-dv6d-1A0A075B624 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Trav15d-1-dv6d-1A0A075B624 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trav15d-1-dv6d-1A0A075B624 Gm27325-201ENSMUST00000175467 74 ntBASIC23.22■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms