Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC14.29□□□□□ -0.12
USP39Q53GS9 NDUFB10P1-201ENST00000567319 521 ntBASIC14.29□□□□□ -0.12
USP39Q53GS9 GAS7-216ENST00000583882 553 ntTSL 5 BASIC14.29□□□□□ -0.12
USP39Q53GS9 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.29□□□□□ -0.12
USP39Q53GS9 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.29□□□□□ -0.12
USP39Q53GS9 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.29□□□□□ -0.12
USP39Q53GS9 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
USP39Q53GS9 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.29□□□□□ -0.12
USP39Q53GS9 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.29□□□□□ -0.12
USP39Q53GS9 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
USP39Q53GS9 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
USP39Q53GS9 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
USP39Q53GS9 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.28□□□□□ -0.12
USP39Q53GS9 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 PEG13-201ENST00000631594 5667 ntBASIC14.28□□□□□ -0.12
USP39Q53GS9 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
USP39Q53GS9 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
USP39Q53GS9 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
USP39Q53GS9 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC14.28□□□□□ -0.12
USP39Q53GS9 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC14.28□□□□□ -0.12
USP39Q53GS9 KRT17P4-201ENST00000429445 819 ntBASIC14.28□□□□□ -0.12
USP39Q53GS9 AC090505.1-201ENST00000430515 1834 ntBASIC14.28□□□□□ -0.12
USP39Q53GS9 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
USP39Q53GS9 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC14.28□□□□□ -0.12
USP39Q53GS9 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC14.28□□□□□ -0.12
USP39Q53GS9 AL135901.1-201ENST00000451812 333 ntBASIC14.28□□□□□ -0.12
USP39Q53GS9 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC14.28□□□□□ -0.12
USP39Q53GS9 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
USP39Q53GS9 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC14.28□□□□□ -0.12
USP39Q53GS9 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.28□□□□□ -0.12
USP39Q53GS9 AP005212.2-201ENST00000584979 510 ntBASIC14.28□□□□□ -0.12
USP39Q53GS9 AP005264.6-204ENST00000588436 719 ntBASIC14.28□□□□□ -0.12
USP39Q53GS9 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC14.28□□□□□ -0.12
USP39Q53GS9 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP39Q53GS9 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
USP39Q53GS9 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 AC016397.2-201ENST00000624848 1985 ntBASIC14.27□□□□□ -0.12
USP39Q53GS9 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
USP39Q53GS9 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.27□□□□□ -0.12
USP39Q53GS9 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.12
USP39Q53GS9 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
USP39Q53GS9 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
USP39Q53GS9 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP39Q53GS9 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC14.27□□□□□ -0.13
USP39Q53GS9 GRPEL2P1-201ENST00000453145 339 ntBASIC14.27□□□□□ -0.13
USP39Q53GS9 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC14.27□□□□□ -0.13
USP39Q53GS9 PPIA-208ENST00000489459 907 ntTSL 2 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms