Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 LRTM1-201ENST00000273286 1423 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 GUK1-206ENST00000366723 845 ntTSL 5 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 RHPN1-AS1-201ENST00000518049 1918 ntBASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AP000812.2-201ENST00000538934 718 ntBASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AC005586.2-201ENST00000563946 837 ntBASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 UBE2Q2P6-202ENST00000617217 443 ntTSL 5 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AP001972.5-201ENST00000624624 2338 ntBASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 TPM3P8-201ENST00000330554 643 ntBASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 RN7SKP230-201ENST00000365642 335 ntBASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 SEC63P1-201ENST00000425785 1258 ntBASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 AC110800.1-201ENST00000505498 441 ntTSL 2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 AC106760.1-201ENST00000508690 800 ntBASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 AC027237.1-201ENST00000560942 655 ntBASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms