Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
BRCA1P38398 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
BRCA1P38398 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
BRCA1P38398 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.34■□□□□ 0.21
BRCA1P38398 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
BRCA1P38398 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
BRCA1P38398 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC16.34■□□□□ 0.21
BRCA1P38398 PTCD2-207ENST00000503868 1653 ntTSL 2 BASIC16.34■□□□□ 0.21
BRCA1P38398 SPINK2-201ENST00000248701 613 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 SPACA5-201ENST00000304355 648 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 GSTM1-204ENST00000369823 852 ntTSL 3 BASIC16.34■□□□□ 0.21
BRCA1P38398 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 OR7E122P-201ENST00000383606 1017 ntBASIC16.34■□□□□ 0.21
BRCA1P38398 MAP1LC3BP1-202ENST00000438342 516 ntTSL 3 BASIC16.34■□□□□ 0.21
BRCA1P38398 AC104623.1-201ENST00000446357 546 ntTSL 4 BASIC16.34■□□□□ 0.21
BRCA1P38398 RN7SL16P-201ENST00000476316 269 ntBASIC16.34■□□□□ 0.21
BRCA1P38398 OPRM1-211ENST00000518759 1060 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 AC103706.1-201ENST00000561761 679 ntBASIC16.34■□□□□ 0.21
BRCA1P38398 MARVELD3-205ENST00000567501 582 ntAPPRIS ALT2 TSL 3 BASIC16.34■□□□□ 0.21
BRCA1P38398 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.34■□□□□ 0.21
BRCA1P38398 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
BRCA1P38398 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
BRCA1P38398 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
BRCA1P38398 BSCL2-203ENST00000360796 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BRCA1P38398 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.33■□□□□ 0.21
BRCA1P38398 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
BRCA1P38398 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
BRCA1P38398 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
BRCA1P38398 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
BRCA1P38398 GLT6D1-201ENST00000371763 1526 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
BRCA1P38398 GLT6D1-202ENST00000613244 1523 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
BRCA1P38398 GZMH-201ENST00000216338 909 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
BRCA1P38398 PLPP4-201ENST00000369073 1135 ntTSL 5 BASIC16.33■□□□□ 0.21
BRCA1P38398 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
BRCA1P38398 HIST1H2BN-201ENST00000396980 432 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
BRCA1P38398 RPP30-203ENST00000413330 1004 ntTSL 5 BASIC16.33■□□□□ 0.21
BRCA1P38398 APRT-202ENST00000426324 664 ntTSL 2 BASIC16.33■□□□□ 0.21
BRCA1P38398 AC114781.1-201ENST00000450559 1028 ntBASIC16.33■□□□□ 0.21
BRCA1P38398 SPATA24-204ENST00000507779 606 ntTSL 5 BASIC16.33■□□□□ 0.21
BRCA1P38398 SPTY2D1-AS1-202ENST00000511927 573 ntAPPRIS ALT2 TSL 4 BASIC16.33■□□□□ 0.21
BRCA1P38398 AC109597.2-201ENST00000569407 927 ntTSL 3 BASIC16.33■□□□□ 0.21
BRCA1P38398 CIRBP-AS1-201ENST00000585832 994 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
BRCA1P38398 SMIM17-201ENST00000598409 1076 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
BRCA1P38398 AC010335.3-201ENST00000623767 531 ntBASIC16.33■□□□□ 0.21
BRCA1P38398 WASH5P-206ENST00000632506 1147 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
BRCA1P38398 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
BRCA1P38398 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
BRCA1P38398 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC16.33■□□□□ 0.21
BRCA1P38398 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
BRCA1P38398 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
BRCA1P38398 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
BRCA1P38398 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.33■□□□□ 0.2
BRCA1P38398 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRCA1P38398 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BRCA1P38398 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRCA1P38398 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC16.33■□□□□ 0.2
BRCA1P38398 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BRCA1P38398 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRCA1P38398 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BRCA1P38398 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRCA1P38398 OBP2A-203ENST00000371776 689 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRCA1P38398 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC16.33■□□□□ 0.2
BRCA1P38398 DNM1P48-201ENST00000419538 439 ntBASIC16.33■□□□□ 0.2
BRCA1P38398 EEF1GP1-201ENST00000457231 1299 ntBASIC16.33■□□□□ 0.2
BRCA1P38398 AC097658.2-201ENST00000512715 624 ntTSL 3 BASIC16.33■□□□□ 0.2
BRCA1P38398 BCRP5-201ENST00000514371 253 ntBASIC16.33■□□□□ 0.2
BRCA1P38398 PXN-AS1-205ENST00000542314 707 ntTSL 2 BASIC16.33■□□□□ 0.2
BRCA1P38398 AL606834.1-201ENST00000553836 1169 ntBASIC16.33■□□□□ 0.2
BRCA1P38398 AL031058.1-201ENST00000561592 888 ntBASIC16.33■□□□□ 0.2
BRCA1P38398 SNAPC5-207ENST00000566658 574 ntAPPRIS ALT2 TSL 4 BASIC16.33■□□□□ 0.2
BRCA1P38398 BRCA1-225ENST00000586385 781 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BRCA1P38398 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
BRCA1P38398 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRCA1P38398 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRCA1P38398 LILRA5-201ENST00000432233 1363 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRCA1P38398 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
BRCA1P38398 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.32■□□□□ 0.2
BRCA1P38398 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
BRCA1P38398 KIR2DL1-201ENST00000291633 1203 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRCA1P38398 WFDC2-202ENST00000339946 420 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BRCA1P38398 WFDC2-204ENST00000372676 614 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRCA1P38398 RNF7-202ENST00000393000 805 ntTSL 2 BASIC16.32■□□□□ 0.2
BRCA1P38398 SMARCB1-203ENST00000407082 1182 ntTSL 5 BASIC16.32■□□□□ 0.2
BRCA1P38398 AL929472.4-201ENST00000447422 691 ntBASIC16.32■□□□□ 0.2
BRCA1P38398 AL359915.1-201ENST00000457719 898 ntTSL 2 BASIC16.32■□□□□ 0.2
BRCA1P38398 PRDM2-213ENST00000503842 705 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms