Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 FTX-216ENST00000638985 1367 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 TP73-203ENST00000357733 4899 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC3Q9BQI4 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 PYY2-201ENST00000315776 282 ntBASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 BAX-205ENST00000391871 687 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 AC018638.5-201ENST00000450885 754 ntBASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 AL133467.4-201ENST00000602953 725 ntBASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 AC127024.7-201ENST00000625101 200 ntBASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 BX640514.1-201ENST00000583223 1918 ntBASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 FAM45BP-202ENST00000592932 1624 ntBASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC3Q9BQI4 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 AC007952.4-201ENST00000573866 637 ntBASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 AC140113.1-201ENST00000603467 169 ntBASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 AC007250.1-201ENST00000608934 338 ntBASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms