Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
HDAC4P56524 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC14.77□□□□□ -0.04
HDAC4P56524 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HDAC4P56524 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.04
HDAC4P56524 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
HDAC4P56524 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
HDAC4P56524 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 AL008707.1-201ENST00000422498 534 ntBASIC14.77□□□□□ -0.05
HDAC4P56524 ISCA2P1-201ENST00000425548 448 ntBASIC14.77□□□□□ -0.05
HDAC4P56524 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 DUX4L50-201ENST00000455245 715 ntBASIC14.77□□□□□ -0.05
HDAC4P56524 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.77□□□□□ -0.05
HDAC4P56524 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.77□□□□□ -0.05
HDAC4P56524 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.77□□□□□ -0.05
HDAC4P56524 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC14.77□□□□□ -0.05
HDAC4P56524 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC14.77□□□□□ -0.05
HDAC4P56524 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.77□□□□□ -0.05
HDAC4P56524 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC14.77□□□□□ -0.05
HDAC4P56524 NDUFV2P1-201ENST00000596415 907 ntBASIC14.77□□□□□ -0.05
HDAC4P56524 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC14.77□□□□□ -0.05
HDAC4P56524 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
HDAC4P56524 AC244093.1-201ENST00000610837 814 ntBASIC14.77□□□□□ -0.05
HDAC4P56524 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC14.77□□□□□ -0.05
HDAC4P56524 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
HDAC4P56524 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 AL731571.1-201ENST00000617058 5428 ntBASIC14.77□□□□□ -0.05
HDAC4P56524 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.77□□□□□ -0.05
HDAC4P56524 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 AC015909.5-201ENST00000624336 2266 ntBASIC14.77□□□□□ -0.05
HDAC4P56524 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.77□□□□□ -0.05
HDAC4P56524 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.77□□□□□ -0.05
HDAC4P56524 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
HDAC4P56524 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
HDAC4P56524 AC067931.2-201ENST00000623655 2003 ntBASIC14.76□□□□□ -0.05
HDAC4P56524 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HDAC4P56524 AC061965.1-201ENST00000560524 1465 ntBASIC14.76□□□□□ -0.05
HDAC4P56524 DGCR9-201ENST00000609630 2415 ntBASIC14.76□□□□□ -0.05
HDAC4P56524 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
HDAC4P56524 DUT-208ENST00000559540 1441 ntTSL 2 BASIC14.76□□□□□ -0.05
HDAC4P56524 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC14.76□□□□□ -0.05
HDAC4P56524 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 COL6A4P2-202ENST00000504443 2753 ntBASIC14.76□□□□□ -0.05
HDAC4P56524 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.76□□□□□ -0.05
HDAC4P56524 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 FRMPD2B-201ENST00000431305 1347 ntBASIC14.76□□□□□ -0.05
HDAC4P56524 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
HDAC4P56524 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.76□□□□□ -0.05
HDAC4P56524 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC14.76□□□□□ -0.05
HDAC4P56524 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
HDAC4P56524 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.76□□□□□ -0.05
HDAC4P56524 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HDAC4P56524 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.76□□□□□ -0.05
HDAC4P56524 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.76□□□□□ -0.05
HDAC4P56524 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC14.76□□□□□ -0.05
HDAC4P56524 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC14.76□□□□□ -0.05
HDAC4P56524 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 AC090857.1-201ENST00000527400 390 ntBASIC14.76□□□□□ -0.05
HDAC4P56524 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC14.76□□□□□ -0.05
HDAC4P56524 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC14.76□□□□□ -0.05
HDAC4P56524 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 KRT8P1-201ENST00000557533 1207 ntBASIC14.76□□□□□ -0.05
HDAC4P56524 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC14.76□□□□□ -0.05
HDAC4P56524 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC14.76□□□□□ -0.05
HDAC4P56524 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HDAC4P56524 HPN-206ENST00000597419 1212 ntTSL 5 BASIC14.76□□□□□ -0.05
HDAC4P56524 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms