Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL6A3P12111 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A3P12111 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A3P12111 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A3P12111 AC105415.1-201ENST00000509015 1416 ntTSL 2 BASIC14.02□□□□□ -0.16
COL6A3P12111 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A3P12111 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A3P12111 TUBB4AP1-201ENST00000450755 1325 ntBASIC14.02□□□□□ -0.16
COL6A3P12111 OR2T34-201ENST00000328782 957 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
COL6A3P12111 OR2T3-201ENST00000359594 957 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
COL6A3P12111 SYCP3-203ENST00000392927 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A3P12111 FTH1P19-201ENST00000402402 528 ntBASIC14.02□□□□□ -0.16
COL6A3P12111 AL392185.1-201ENST00000419620 395 ntTSL 2 BASIC14.02□□□□□ -0.16
COL6A3P12111 AP001092.1-201ENST00000433606 469 ntTSL 3 BASIC14.02□□□□□ -0.16
COL6A3P12111 AC253536.5-201ENST00000506097 347 ntBASIC14.02□□□□□ -0.16
COL6A3P12111 OR10V2P-201ENST00000525296 764 ntBASIC14.02□□□□□ -0.16
COL6A3P12111 AC104982.2-201ENST00000584258 893 ntTSL 5 BASIC14.02□□□□□ -0.16
COL6A3P12111 AC244097.1-201ENST00000621631 1216 ntBASIC14.02□□□□□ -0.16
COL6A3P12111 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A3P12111 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A3P12111 CICP6-201ENST00000457191 2729 ntBASIC14.02□□□□□ -0.16
COL6A3P12111 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A3P12111 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A3P12111 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
COL6A3P12111 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A3P12111 FAM173B-207ENST00000511437 1423 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A3P12111 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.02□□□□□ -0.17
COL6A3P12111 MEG8-220ENST00000636052 1369 ntTSL 5 BASIC14.02□□□□□ -0.17
COL6A3P12111 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC14.02□□□□□ -0.17
COL6A3P12111 ARL15-205ENST00000507646 578 ntTSL 5 BASIC14.02□□□□□ -0.17
COL6A3P12111 B2M-202ENST00000544417 933 ntTSL 5 BASIC14.02□□□□□ -0.17
COL6A3P12111 ELP5-210ENST00000573657 687 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A3P12111 MIR4539-201ENST00000579784 60 ntBASIC14.02□□□□□ -0.17
COL6A3P12111 AC005154.1-204ENST00000580902 926 ntTSL 4 BASIC14.02□□□□□ -0.17
COL6A3P12111 ZNF544-209ENST00000596929 543 ntTSL 4 BASIC14.02□□□□□ -0.17
COL6A3P12111 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
COL6A3P12111 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.02□□□□□ -0.17
COL6A3P12111 DDC-204ENST00000426377 1700 ntTSL 3 BASIC14.02□□□□□ -0.17
COL6A3P12111 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A3P12111 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A3P12111 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
COL6A3P12111 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
COL6A3P12111 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC14.02□□□□□ -0.17
COL6A3P12111 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A3P12111 AL353801.2-201ENST00000436877 1444 ntTSL 5 BASIC14.02□□□□□ -0.17
COL6A3P12111 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
COL6A3P12111 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A3P12111 CPA5-203ENST00000461828 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A3P12111 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A3P12111 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
COL6A3P12111 SMUG1-201ENST00000243112 627 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A3P12111 AKR1C6P-201ENST00000432950 983 ntBASIC14.02□□□□□ -0.17
COL6A3P12111 PFN1P3-201ENST00000443612 402 ntBASIC14.02□□□□□ -0.17
COL6A3P12111 PFN1P4-201ENST00000450970 402 ntBASIC14.02□□□□□ -0.17
COL6A3P12111 RN7SL521P-201ENST00000488398 297 ntBASIC14.02□□□□□ -0.17
COL6A3P12111 AP002383.2-201ENST00000545768 675 ntBASIC14.02□□□□□ -0.17
COL6A3P12111 MIA-RAB4B-201ENST00000600729 1229 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
COL6A3P12111 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
COL6A3P12111 GAS6-AS2-201ENST00000608651 1952 ntTSL 2 BASIC14.01□□□□□ -0.17
COL6A3P12111 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
COL6A3P12111 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC14.01□□□□□ -0.17
COL6A3P12111 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.01□□□□□ -0.17
COL6A3P12111 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
COL6A3P12111 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
COL6A3P12111 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
COL6A3P12111 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.01□□□□□ -0.17
COL6A3P12111 MIA-201ENST00000263369 632 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 PPP1R32-202ENST00000366212 488 ntTSL 2 BASIC14.01□□□□□ -0.17
COL6A3P12111 TRIQK-213ENST00000521617 774 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
COL6A3P12111 IGLCOR22-1-201ENST00000523725 316 ntBASIC14.01□□□□□ -0.17
COL6A3P12111 NT5CP2-201ENST00000553305 561 ntBASIC14.01□□□□□ -0.17
COL6A3P12111 IGHV1OR16-2-201ENST00000564937 349 ntBASIC14.01□□□□□ -0.17
COL6A3P12111 MIA-203ENST00000594436 507 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
COL6A3P12111 LINC00694-204ENST00000637612 1059 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
COL6A3P12111 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 FAM9A-201ENST00000381003 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.01□□□□□ -0.17
COL6A3P12111 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.01□□□□□ -0.17
COL6A3P12111 NIFK-AS1-202ENST00000414554 1411 ntTSL 2 BASIC14.01□□□□□ -0.17
COL6A3P12111 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 AL157832.2-205ENST00000597245 1649 ntBASIC14.01□□□□□ -0.17
COL6A3P12111 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.01□□□□□ -0.17
COL6A3P12111 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
COL6A3P12111 TBC1D21-201ENST00000300504 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 TMEM18-203ENST00000405941 654 ntAPPRIS ALT2 TSL 3 BASIC14.01□□□□□ -0.17
COL6A3P12111 TRGV2-201ENST00000426402 544 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
COL6A3P12111 AL356488.1-201ENST00000429752 609 ntBASIC14.01□□□□□ -0.17
COL6A3P12111 AL162724.1-201ENST00000437461 373 ntTSL 2 BASIC14.01□□□□□ -0.17
COL6A3P12111 HP-215ENST00000569639 568 ntTSL 4 BASIC14.01□□□□□ -0.17
COL6A3P12111 CTBP2P7-201ENST00000593270 1244 ntBASIC14.01□□□□□ -0.17
COL6A3P12111 AC078880.3-201ENST00000603439 1121 ntBASIC14.01□□□□□ -0.17
COL6A3P12111 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms