Protein–RNA interactions for Protein: Q8NC42

RNF149, E3 ubiquitin-protein ligase RNF149, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF149Q8NC42 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
RNF149Q8NC42 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RNF149Q8NC42 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC24.76■■□□□ 1.55
RNF149Q8NC42 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC24.76■■□□□ 1.55
RNF149Q8NC42 AC142381.2-201ENST00000566120 298 ntBASIC24.76■■□□□ 1.55
RNF149Q8NC42 MIR3181-201ENST00000578512 73 ntBASIC24.76■■□□□ 1.55
RNF149Q8NC42 AL355001.2-201ENST00000620617 1191 ntBASIC24.76■■□□□ 1.55
RNF149Q8NC42 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RNF149Q8NC42 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RNF149Q8NC42 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC24.76■■□□□ 1.55
RNF149Q8NC42 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RNF149Q8NC42 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
RNF149Q8NC42 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.75■■□□□ 1.55
RNF149Q8NC42 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
RNF149Q8NC42 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
RNF149Q8NC42 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC24.75■■□□□ 1.55
RNF149Q8NC42 SUDS3P1-201ENST00000505831 966 ntBASIC24.75■■□□□ 1.55
RNF149Q8NC42 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC24.75■■□□□ 1.55
RNF149Q8NC42 AC011298.3-201ENST00000615796 283 ntBASIC24.75■■□□□ 1.55
RNF149Q8NC42 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
RNF149Q8NC42 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
RNF149Q8NC42 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC24.75■■□□□ 1.55
RNF149Q8NC42 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
RNF149Q8NC42 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
RNF149Q8NC42 HES6-206ENST00000409574 738 ntTSL 2 BASIC24.74■■□□□ 1.55
RNF149Q8NC42 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC24.74■■□□□ 1.55
RNF149Q8NC42 GRAMD4P4-201ENST00000613563 1115 ntBASIC24.74■■□□□ 1.55
RNF149Q8NC42 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
RNF149Q8NC42 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
RNF149Q8NC42 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
RNF149Q8NC42 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC24.74■■□□□ 1.55
RNF149Q8NC42 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
RNF149Q8NC42 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC24.74■■□□□ 1.55
RNF149Q8NC42 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.74■■□□□ 1.55
RNF149Q8NC42 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
RNF149Q8NC42 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
RNF149Q8NC42 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
RNF149Q8NC42 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
RNF149Q8NC42 GTSE1-AS1-202ENST00000623117 1518 ntBASIC24.73■■□□□ 1.55
RNF149Q8NC42 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
RNF149Q8NC42 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC24.73■■□□□ 1.55
RNF149Q8NC42 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
RNF149Q8NC42 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC24.73■■□□□ 1.55
RNF149Q8NC42 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
RNF149Q8NC42 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
RNF149Q8NC42 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
RNF149Q8NC42 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
RNF149Q8NC42 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC24.72■■□□□ 1.55
RNF149Q8NC42 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.72■■□□□ 1.55
RNF149Q8NC42 pRNA.6-201ENST00000610482 90 ntBASIC24.72■■□□□ 1.55
RNF149Q8NC42 pRNA.5-201ENST00000612139 90 ntBASIC24.72■■□□□ 1.55
RNF149Q8NC42 pRNA.11-201ENST00000618423 90 ntBASIC24.72■■□□□ 1.55
RNF149Q8NC42 pRNA.13-201ENST00000619112 90 ntBASIC24.72■■□□□ 1.55
RNF149Q8NC42 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
RNF149Q8NC42 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
RNF149Q8NC42 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
RNF149Q8NC42 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
RNF149Q8NC42 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
RNF149Q8NC42 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
RNF149Q8NC42 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
RNF149Q8NC42 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
RNF149Q8NC42 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC24.71■■□□□ 1.55
RNF149Q8NC42 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
RNF149Q8NC42 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
RNF149Q8NC42 AC136469.2-201ENST00000623944 1028 ntBASIC24.7■■□□□ 1.54
RNF149Q8NC42 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
RNF149Q8NC42 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
RNF149Q8NC42 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.7■■□□□ 1.54
RNF149Q8NC42 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
RNF149Q8NC42 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
RNF149Q8NC42 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
RNF149Q8NC42 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC24.69■■□□□ 1.54
RNF149Q8NC42 AP001330.3-201ENST00000520123 633 ntBASIC24.69■■□□□ 1.54
RNF149Q8NC42 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
RNF149Q8NC42 AF213884.3-201ENST00000563833 479 ntBASIC24.69■■□□□ 1.54
RNF149Q8NC42 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.69■■□□□ 1.54
RNF149Q8NC42 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.69■■□□□ 1.54
RNF149Q8NC42 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
RNF149Q8NC42 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
RNF149Q8NC42 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
RNF149Q8NC42 AC144652.1-201ENST00000609974 1624 ntBASIC24.68■■□□□ 1.54
RNF149Q8NC42 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
RNF149Q8NC42 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.68■■□□□ 1.54
RNF149Q8NC42 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC24.68■■□□□ 1.54
RNF149Q8NC42 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC24.68■■□□□ 1.54
RNF149Q8NC42 AL136967.2-201ENST00000623968 743 ntBASIC24.68■■□□□ 1.54
RNF149Q8NC42 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
RNF149Q8NC42 FP325331.1-202ENST00000623531 1380 ntBASIC24.67■■□□□ 1.54
RNF149Q8NC42 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
RNF149Q8NC42 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
RNF149Q8NC42 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
RNF149Q8NC42 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC24.67■■□□□ 1.54
RNF149Q8NC42 MIR939-201ENST00000401314 82 ntBASIC24.67■■□□□ 1.54
RNF149Q8NC42 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC24.67■■□□□ 1.54
RNF149Q8NC42 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC24.67■■□□□ 1.54
RNF149Q8NC42 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC24.67■■□□□ 1.54
RNF149Q8NC42 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
RNF149Q8NC42 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24.67■■□□□ 1.54
RNF149Q8NC42 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
RNF149Q8NC42 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms