Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AL161729.1-201ENST00000604104 1402 ntBASIC23.26■■□□□ 1.31
SLC44A3Q8N4M1 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SLC44A3Q8N4M1 KRT18P14-201ENST00000534205 1250 ntBASIC23.26■■□□□ 1.31
SLC44A3Q8N4M1 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC23.26■■□□□ 1.31
SLC44A3Q8N4M1 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
SLC44A3Q8N4M1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
SLC44A3Q8N4M1 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SLC44A3Q8N4M1 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC23.25■■□□□ 1.31
SLC44A3Q8N4M1 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SLC44A3Q8N4M1 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SLC44A3Q8N4M1 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.25■■□□□ 1.31
SLC44A3Q8N4M1 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC23.25■■□□□ 1.31
SLC44A3Q8N4M1 TERF1P2-201ENST00000583350 1212 ntBASIC23.25■■□□□ 1.31
SLC44A3Q8N4M1 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SLC44A3Q8N4M1 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
SLC44A3Q8N4M1 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
SLC44A3Q8N4M1 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SLC44A3Q8N4M1 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
SLC44A3Q8N4M1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SLC44A3Q8N4M1 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SLC44A3Q8N4M1 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.24■■□□□ 1.31
SLC44A3Q8N4M1 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
SLC44A3Q8N4M1 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC23.24■■□□□ 1.31
SLC44A3Q8N4M1 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SLC44A3Q8N4M1 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.24■■□□□ 1.31
SLC44A3Q8N4M1 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
SLC44A3Q8N4M1 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC23.23■■□□□ 1.31
SLC44A3Q8N4M1 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SLC44A3Q8N4M1 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC23.23■■□□□ 1.31
SLC44A3Q8N4M1 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23.23■■□□□ 1.31
SLC44A3Q8N4M1 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SLC44A3Q8N4M1 LINC02228-203ENST00000641970 1355 ntBASIC23.23■■□□□ 1.31
SLC44A3Q8N4M1 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC23.23■■□□□ 1.31
SLC44A3Q8N4M1 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
SLC44A3Q8N4M1 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SLC44A3Q8N4M1 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.22■■□□□ 1.31
SLC44A3Q8N4M1 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
SLC44A3Q8N4M1 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.22■■□□□ 1.31
SLC44A3Q8N4M1 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.21■■□□□ 1.31
SLC44A3Q8N4M1 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.21■■□□□ 1.31
SLC44A3Q8N4M1 ME3-201ENST00000323418 1068 ntTSL 5 BASIC23.21■■□□□ 1.31
SLC44A3Q8N4M1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
SLC44A3Q8N4M1 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC23.21■■□□□ 1.31
SLC44A3Q8N4M1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SLC44A3Q8N4M1 AC133637.1-201ENST00000624115 1537 ntBASIC23.21■■□□□ 1.31
SLC44A3Q8N4M1 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SLC44A3Q8N4M1 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 ALDH1A3-203ENST00000557963 1670 ntBASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SLC44A3Q8N4M1 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
SLC44A3Q8N4M1 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SLC44A3Q8N4M1 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SLC44A3Q8N4M1 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC23.19■■□□□ 1.3
SLC44A3Q8N4M1 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC23.19■■□□□ 1.3
SLC44A3Q8N4M1 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SLC44A3Q8N4M1 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC23.19■■□□□ 1.3
SLC44A3Q8N4M1 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC23.19■■□□□ 1.3
SLC44A3Q8N4M1 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.19■■□□□ 1.3
SLC44A3Q8N4M1 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SLC44A3Q8N4M1 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
SLC44A3Q8N4M1 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SLC44A3Q8N4M1 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SLC44A3Q8N4M1 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
SLC44A3Q8N4M1 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
SLC44A3Q8N4M1 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SLC44A3Q8N4M1 HLA-L-209ENST00000420110 1011 ntBASIC23.18■■□□□ 1.3
SLC44A3Q8N4M1 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SLC44A3Q8N4M1 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.18■■□□□ 1.3
SLC44A3Q8N4M1 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SLC44A3Q8N4M1 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SLC44A3Q8N4M1 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SLC44A3Q8N4M1 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SLC44A3Q8N4M1 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.17■■□□□ 1.3
SLC44A3Q8N4M1 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
SLC44A3Q8N4M1 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SLC44A3Q8N4M1 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SLC44A3Q8N4M1 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.17■■□□□ 1.3
SLC44A3Q8N4M1 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SLC44A3Q8N4M1 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SLC44A3Q8N4M1 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SLC44A3Q8N4M1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.17■■□□□ 1.3
SLC44A3Q8N4M1 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC23.17■■□□□ 1.3
SLC44A3Q8N4M1 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC23.17■■□□□ 1.3
SLC44A3Q8N4M1 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC44A3Q8N4M1 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC44A3Q8N4M1 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC44A3Q8N4M1 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC44A3Q8N4M1 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms