Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28AQ8IWP9 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CCDC28AQ8IWP9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
CCDC28AQ8IWP9 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28AQ8IWP9 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28AQ8IWP9 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28AQ8IWP9 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28AQ8IWP9 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC28AQ8IWP9 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC28AQ8IWP9 AL162393.1-201ENST00000437852 946 ntBASIC18.7■□□□□ 0.58
CCDC28AQ8IWP9 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28AQ8IWP9 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC28AQ8IWP9 AC087741.3-201ENST00000624270 1347 ntBASIC18.7■□□□□ 0.58
CCDC28AQ8IWP9 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC28AQ8IWP9 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28AQ8IWP9 AL020996.1-203ENST00000536896 2307 ntBASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28AQ8IWP9 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 MIR6090-201ENST00000622481 60 ntBASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28AQ8IWP9 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28AQ8IWP9 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 AC242852.2-201ENST00000615738 1807 ntBASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 BOD1-206ENST00000480951 814 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28AQ8IWP9 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 NRG1-221ENST00000614767 762 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 FBXW4P1-201ENST00000426721 2239 ntBASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28AQ8IWP9 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC18.64■□□□□ 0.58
CCDC28AQ8IWP9 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC28AQ8IWP9 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC28AQ8IWP9 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC28AQ8IWP9 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28AQ8IWP9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC28AQ8IWP9 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28AQ8IWP9 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CCDC28AQ8IWP9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28AQ8IWP9 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms