Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLDN6P56747 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.72■■□□□ 1.07
CLDN6P56747 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
CLDN6P56747 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.71■■□□□ 1.07
CLDN6P56747 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN6P56747 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.71■■□□□ 1.07
CLDN6P56747 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN6P56747 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN6P56747 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CLDN6P56747 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN6P56747 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN6P56747 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.71■■□□□ 1.07
CLDN6P56747 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN6P56747 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN6P56747 AC027612.3-201ENST00000413684 1047 ntBASIC21.7■■□□□ 1.06
CLDN6P56747 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.7■■□□□ 1.06
CLDN6P56747 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.7■■□□□ 1.06
CLDN6P56747 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN6P56747 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN6P56747 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN6P56747 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CLDN6P56747 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CLDN6P56747 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CLDN6P56747 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN6P56747 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CLDN6P56747 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN6P56747 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CLDN6P56747 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN6P56747 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN6P56747 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN6P56747 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.69■■□□□ 1.06
CLDN6P56747 AC012414.1-201ENST00000556676 535 ntBASIC21.69■■□□□ 1.06
CLDN6P56747 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.69■■□□□ 1.06
CLDN6P56747 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN6P56747 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN6P56747 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CLDN6P56747 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN6P56747 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN6P56747 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CLDN6P56747 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.69■■□□□ 1.06
CLDN6P56747 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN6P56747 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CLDN6P56747 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN6P56747 NTF6G-201ENST00000591094 616 ntBASIC21.68■■□□□ 1.06
CLDN6P56747 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.68■■□□□ 1.06
CLDN6P56747 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
CLDN6P56747 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN6P56747 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN6P56747 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN6P56747 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN6P56747 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN6P56747 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN6P56747 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.67■■□□□ 1.06
CLDN6P56747 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN6P56747 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.67■■□□□ 1.06
CLDN6P56747 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.67■■□□□ 1.06
CLDN6P56747 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.67■■□□□ 1.06
CLDN6P56747 IGHV3-19-201ENST00000521488 291 ntBASIC21.67■■□□□ 1.06
CLDN6P56747 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN6P56747 AL358852.1-201ENST00000623174 1268 ntBASIC21.67■■□□□ 1.06
CLDN6P56747 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN6P56747 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN6P56747 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN6P56747 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CLDN6P56747 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.66■■□□□ 1.06
CLDN6P56747 AC123595.1-201ENST00000440769 1046 ntBASIC21.66■■□□□ 1.06
CLDN6P56747 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.66■■□□□ 1.06
CLDN6P56747 AC010525.1-201ENST00000585559 441 ntBASIC21.66■■□□□ 1.06
CLDN6P56747 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.66■■□□□ 1.06
CLDN6P56747 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.66■■□□□ 1.06
CLDN6P56747 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN6P56747 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
CLDN6P56747 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN6P56747 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.66■■□□□ 1.06
CLDN6P56747 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.66■■□□□ 1.06
CLDN6P56747 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN6P56747 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN6P56747 MIR572-201ENST00000384983 95 ntBASIC21.65■■□□□ 1.06
CLDN6P56747 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN6P56747 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN6P56747 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN6P56747 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN6P56747 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN6P56747 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLDN6P56747 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.64■■□□□ 1.05
CLDN6P56747 HLA-L-209ENST00000420110 1011 ntBASIC21.64■■□□□ 1.05
CLDN6P56747 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CLDN6P56747 KRT18P14-201ENST00000534205 1250 ntBASIC21.64■■□□□ 1.05
CLDN6P56747 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.64■■□□□ 1.05
CLDN6P56747 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CLDN6P56747 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.64■■□□□ 1.05
CLDN6P56747 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.64■■□□□ 1.05
CLDN6P56747 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLDN6P56747 HLA-L-211ENST00000482052 1765 ntBASIC21.64■■□□□ 1.05
CLDN6P56747 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN6P56747 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN6P56747 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.63■■□□□ 1.05
CLDN6P56747 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.63■■□□□ 1.05
CLDN6P56747 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN6P56747 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms