Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AP002852.2-202ENST00000523572 592 ntTSL 4 BASIC16.47■□□□□ 0.23
BRCA1P38398 MED11-203ENST00000575284 652 ntTSL 3 BASIC16.47■□□□□ 0.23
BRCA1P38398 ALOX12P1-201ENST00000579299 1229 ntBASIC16.47■□□□□ 0.23
BRCA1P38398 MIR4459-201ENST00000581837 66 ntBASIC16.47■□□□□ 0.23
BRCA1P38398 MIR378I-201ENST00000582688 76 ntBASIC16.47■□□□□ 0.23
BRCA1P38398 GPHB5-202ENST00000621500 543 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
BRCA1P38398 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC16.47■□□□□ 0.23
BRCA1P38398 AC117500.5-201ENST00000623233 527 ntBASIC16.47■□□□□ 0.23
BRCA1P38398 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
BRCA1P38398 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 LINC00910-201ENST00000341011 2303 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
BRCA1P38398 SRL-202ENST00000537996 1814 ntTSL 2 BASIC16.47■□□□□ 0.23
BRCA1P38398 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
BRCA1P38398 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
BRCA1P38398 AC020910.6-201ENST00000623084 1459 ntBASIC16.46■□□□□ 0.23
BRCA1P38398 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BRCA1P38398 GGPS1-203ENST00000391855 1407 ntTSL 2 BASIC16.46■□□□□ 0.23
BRCA1P38398 RN7SKP255-201ENST00000363442 313 ntBASIC16.46■□□□□ 0.23
BRCA1P38398 RN7SKP203-201ENST00000363618 332 ntBASIC16.46■□□□□ 0.23
BRCA1P38398 RN7SKP71-201ENST00000364558 318 ntBASIC16.46■□□□□ 0.23
BRCA1P38398 7SK.1-201ENST00000365328 331 ntBASIC16.46■□□□□ 0.23
BRCA1P38398 AL356653.1-201ENST00000402743 360 ntBASIC16.46■□□□□ 0.23
BRCA1P38398 CROT-203ENST00000419147 2959 ntTSL 2 BASIC16.46■□□□□ 0.23
BRCA1P38398 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
BRCA1P38398 AC090589.3-201ENST00000524412 574 ntTSL 5 BASIC16.46■□□□□ 0.23
BRCA1P38398 AC003965.2-201ENST00000577140 265 ntTSL 3 BASIC16.46■□□□□ 0.23
BRCA1P38398 AC103810.4-201ENST00000578601 257 ntBASIC16.46■□□□□ 0.23
BRCA1P38398 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
BRCA1P38398 AC009118.3-201ENST00000622896 873 ntBASIC16.46■□□□□ 0.23
BRCA1P38398 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC16.46■□□□□ 0.23
BRCA1P38398 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.46■□□□□ 0.23
BRCA1P38398 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BRCA1P38398 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
BRCA1P38398 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BRCA1P38398 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
BRCA1P38398 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC16.46■□□□□ 0.23
BRCA1P38398 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
BRCA1P38398 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
BRCA1P38398 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
BRCA1P38398 KATNAL1-202ENST00000380617 1634 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
BRCA1P38398 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.46■□□□□ 0.23
BRCA1P38398 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
BRCA1P38398 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
BRCA1P38398 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
BRCA1P38398 SKAP1-208ENST00000584924 1477 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
BRCA1P38398 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC16.46■□□□□ 0.23
BRCA1P38398 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BRCA1P38398 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
BRCA1P38398 VAMP2-203ENST00000481878 557 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.22
BRCA1P38398 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
BRCA1P38398 AC021072.1-201ENST00000635789 835 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
BRCA1P38398 LINC00959-202ENST00000637128 826 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
BRCA1P38398 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.45■□□□□ 0.22
BRCA1P38398 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC16.45■□□□□ 0.22
BRCA1P38398 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
BRCA1P38398 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.45■□□□□ 0.22
BRCA1P38398 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 ECH1-201ENST00000221418 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 COMMD10-207ENST00000632434 1433 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
BRCA1P38398 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
BRCA1P38398 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
BRCA1P38398 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
BRCA1P38398 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC16.45■□□□□ 0.22
BRCA1P38398 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.45■□□□□ 0.22
BRCA1P38398 SNAP25-AS1-202ENST00000426491 804 ntTSL 5 BASIC16.45■□□□□ 0.22
BRCA1P38398 GAPDHP29-201ENST00000429913 985 ntBASIC16.45■□□□□ 0.22
BRCA1P38398 CHCHD2P6-201ENST00000454346 447 ntBASIC16.45■□□□□ 0.22
BRCA1P38398 NAA60-236ENST00000577013 575 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 RN7SL5P-201ENST00000581458 321 ntBASIC16.45■□□□□ 0.22
BRCA1P38398 Z82244.1-201ENST00000631502 840 ntBASIC16.45■□□□□ 0.22
BRCA1P38398 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.45■□□□□ 0.22
BRCA1P38398 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 POM121L14P-201ENST00000406100 1558 ntBASIC16.45■□□□□ 0.22
BRCA1P38398 ERG-211ENST00000453032 1595 ntTSL 2 BASIC16.45■□□□□ 0.22
BRCA1P38398 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.45■□□□□ 0.22
BRCA1P38398 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.45■□□□□ 0.22
BRCA1P38398 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 CALU-202ENST00000449187 2438 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BRCA1P38398 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
BRCA1P38398 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
BRCA1P38398 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
BRCA1P38398 GMEB1-201ENST00000294409 1912 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 TKT-201ENST00000296289 1931 ntTSL 5 BASIC16.44■□□□□ 0.22
BRCA1P38398 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 IDH3A-207ENST00000558554 1595 ntTSL 2 BASIC16.44■□□□□ 0.22
BRCA1P38398 RNF170-202ENST00000319073 1265 ntTSL 2 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms