Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC16.13■□□□□ 0.17
SMARCA1P28370 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC16.13■□□□□ 0.17
SMARCA1P28370 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SMARCA1P28370 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SMARCA1P28370 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC16.12■□□□□ 0.17
SMARCA1P28370 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC16.12■□□□□ 0.17
SMARCA1P28370 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SMARCA1P28370 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC16.12■□□□□ 0.17
SMARCA1P28370 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SMARCA1P28370 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
SMARCA1P28370 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SMARCA1P28370 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SMARCA1P28370 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SMARCA1P28370 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC16.12■□□□□ 0.17
SMARCA1P28370 DDC-204ENST00000426377 1700 ntTSL 3 BASIC16.12■□□□□ 0.17
SMARCA1P28370 AC078991.1-201ENST00000437297 610 ntBASIC16.12■□□□□ 0.17
SMARCA1P28370 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC16.12■□□□□ 0.17
SMARCA1P28370 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC16.12■□□□□ 0.17
SMARCA1P28370 PRSS3P1-201ENST00000503996 742 ntBASIC16.12■□□□□ 0.17
SMARCA1P28370 RNA5SP417-201ENST00000516459 108 ntBASIC16.12■□□□□ 0.17
SMARCA1P28370 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC16.12■□□□□ 0.17
SMARCA1P28370 AC007952.4-201ENST00000573866 637 ntBASIC16.12■□□□□ 0.17
SMARCA1P28370 RPL17P45-201ENST00000586289 509 ntBASIC16.12■□□□□ 0.17
SMARCA1P28370 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC16.12■□□□□ 0.17
SMARCA1P28370 AL009176.1-201ENST00000607876 650 ntBASIC16.12■□□□□ 0.17
SMARCA1P28370 AC073352.2-201ENST00000609385 439 ntBASIC16.12■□□□□ 0.17
SMARCA1P28370 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC16.12■□□□□ 0.17
SMARCA1P28370 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SMARCA1P28370 AC072061.1-201ENST00000569710 2234 ntBASIC16.12■□□□□ 0.17
SMARCA1P28370 AC111170.3-201ENST00000624282 2464 ntBASIC16.12■□□□□ 0.17
SMARCA1P28370 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC16.12■□□□□ 0.17
SMARCA1P28370 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SMARCA1P28370 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
SMARCA1P28370 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SMARCA1P28370 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SMARCA1P28370 MSANTD2P1-201ENST00000445341 1368 ntBASIC16.12■□□□□ 0.17
SMARCA1P28370 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SMARCA1P28370 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC16.12■□□□□ 0.17
SMARCA1P28370 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.11■□□□□ 0.17
SMARCA1P28370 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
SMARCA1P28370 OR2I1P-210ENST00000642037 4691 ntBASIC16.11■□□□□ 0.17
SMARCA1P28370 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SMARCA1P28370 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SMARCA1P28370 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC16.11■□□□□ 0.17
SMARCA1P28370 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 RNVU1-8-201ENST00000364272 125 ntBASIC16.11■□□□□ 0.17
SMARCA1P28370 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
SMARCA1P28370 CROT-203ENST00000419147 2959 ntTSL 2 BASIC16.11■□□□□ 0.17
SMARCA1P28370 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC16.11■□□□□ 0.17
SMARCA1P28370 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC16.11■□□□□ 0.17
SMARCA1P28370 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.11■□□□□ 0.17
SMARCA1P28370 AC098935.1-201ENST00000446057 611 ntBASIC16.11■□□□□ 0.17
SMARCA1P28370 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC16.11■□□□□ 0.17
SMARCA1P28370 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC16.11■□□□□ 0.17
SMARCA1P28370 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
SMARCA1P28370 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC16.11■□□□□ 0.17
SMARCA1P28370 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC16.11■□□□□ 0.17
SMARCA1P28370 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC16.11■□□□□ 0.17
SMARCA1P28370 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC16.11■□□□□ 0.17
SMARCA1P28370 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC16.11■□□□□ 0.17
SMARCA1P28370 WDR7-208ENST00000589935 544 ntTSL 4 BASIC16.11■□□□□ 0.17
SMARCA1P28370 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC16.11■□□□□ 0.17
SMARCA1P28370 AL356740.1-201ENST00000602192 1297 ntBASIC16.11■□□□□ 0.17
SMARCA1P28370 AC140113.1-201ENST00000603467 169 ntBASIC16.11■□□□□ 0.17
SMARCA1P28370 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
SMARCA1P28370 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
SMARCA1P28370 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SMARCA1P28370 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SMARCA1P28370 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SMARCA1P28370 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC16.11■□□□□ 0.17
SMARCA1P28370 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SMARCA1P28370 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms