Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC245100.3-201ENST00000441281 285 ntBASIC13.61□□□□□ -0.23
MSX2P35548 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX2P35548 INE1-201ENST00000456273 945 ntBASIC13.61□□□□□ -0.23
MSX2P35548 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 CD81-207ENST00000481687 890 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX2P35548 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX2P35548 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.61□□□□□ -0.23
MSX2P35548 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC13.61□□□□□ -0.23
MSX2P35548 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.61□□□□□ -0.23
MSX2P35548 AC093028.1-201ENST00000622998 982 ntBASIC13.61□□□□□ -0.23
MSX2P35548 AC010970.1-201ENST00000445125 1848 ntBASIC13.61□□□□□ -0.23
MSX2P35548 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
MSX2P35548 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.61□□□□□ -0.23
MSX2P35548 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC13.61□□□□□ -0.23
MSX2P35548 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX2P35548 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 AL390066.1-201ENST00000456414 2302 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX2P35548 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
MSX2P35548 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 LILRB1-203ENST00000396317 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC13.6□□□□□ -0.23
MSX2P35548 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
MSX2P35548 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.6□□□□□ -0.23
MSX2P35548 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 OSM-203ENST00000403463 464 ntTSL 3 BASIC13.6□□□□□ -0.23
MSX2P35548 AL442647.2-201ENST00000429864 857 ntBASIC13.6□□□□□ -0.23
MSX2P35548 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC13.6□□□□□ -0.23
MSX2P35548 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
MSX2P35548 FAM86GP-201ENST00000448322 971 ntBASIC13.6□□□□□ -0.23
MSX2P35548 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.6□□□□□ -0.23
MSX2P35548 TMPRSS11CP-201ENST00000453277 683 ntBASIC13.6□□□□□ -0.23
MSX2P35548 AC092183.1-201ENST00000469884 875 ntBASIC13.6□□□□□ -0.23
MSX2P35548 ALG3P1-201ENST00000508806 1114 ntBASIC13.6□□□□□ -0.23
MSX2P35548 MSNP1-201ENST00000511640 1732 ntBASIC13.6□□□□□ -0.23
MSX2P35548 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
MSX2P35548 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.6□□□□□ -0.23
MSX2P35548 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC13.6□□□□□ -0.23
MSX2P35548 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.6□□□□□ -0.23
MSX2P35548 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.6□□□□□ -0.23
MSX2P35548 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
MSX2P35548 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 RRP7BP-205ENST00000566851 833 ntBASIC13.6□□□□□ -0.23
MSX2P35548 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC13.6□□□□□ -0.23
MSX2P35548 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
MSX2P35548 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC13.6□□□□□ -0.23
MSX2P35548 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC13.6□□□□□ -0.23
MSX2P35548 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.6□□□□□ -0.23
MSX2P35548 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
MSX2P35548 AGGF1P10-201ENST00000635005 2191 ntBASIC13.6□□□□□ -0.23
MSX2P35548 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 FAM76A-204ENST00000373954 3567 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 ZDHHC11-201ENST00000283441 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MSX2P35548 LINC02015-202ENST00000436078 2957 ntTSL 2 BASIC13.59□□□□□ -0.23
MSX2P35548 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MSX2P35548 SLC5A8-201ENST00000536262 4178 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MSX2P35548 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
MSX2P35548 CES1P1-201ENST00000421606 1704 ntBASIC13.59□□□□□ -0.23
MSX2P35548 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
MSX2P35548 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MSX2P35548 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MSX2P35548 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
MSX2P35548 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MSX2P35548 OCA2-201ENST00000353809 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
MSX2P35548 CCDC187-204ENST00000624277 3918 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
MSX2P35548 AC009093.10-201ENST00000641956 1442 ntBASIC13.59□□□□□ -0.23
MSX2P35548 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
MSX2P35548 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
MSX2P35548 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
MSX2P35548 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC13.59□□□□□ -0.23
MSX2P35548 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MSX2P35548 CALY-202ENST00000368555 783 ntTSL 2 BASIC13.59□□□□□ -0.23
MSX2P35548 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.59□□□□□ -0.23
MSX2P35548 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
MSX2P35548 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC13.59□□□□□ -0.23
MSX2P35548 FTLP10-202ENST00000505798 471 ntBASIC13.59□□□□□ -0.23
MSX2P35548 KRT18P25-201ENST00000508931 1278 ntBASIC13.59□□□□□ -0.23
MSX2P35548 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC13.59□□□□□ -0.23
MSX2P35548 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms